Experiment: Chloramphenicol 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03120 and AO353_03125 overlap by 16 nucleotides AO353_03125 and AO353_03130 are separated by 78 nucleotides AO353_03130 and AO353_03135 overlap by 4 nucleotides AO353_03135 and AO353_03140 overlap by 13 nucleotides AO353_03140 and AO353_03145 are separated by 251 nucleotides
AO353_03120: AO353_03120 - hypothetical protein, at 668,154 to 668,693
_03120
AO353_03125: AO353_03125 - LysR family transcriptional regulator, at 668,678 to 669,577
_03125
AO353_03130: AO353_03130 - hypothetical protein, at 669,656 to 670,366
_03130
AO353_03135: AO353_03135 - hypothetical protein, at 670,363 to 670,695
_03135
AO353_03140: AO353_03140 - hypothetical protein, at 670,683 to 671,012
_03140
AO353_03145: AO353_03145 - glycerophosphodiester phosphodiesterase, at 671,264 to 672,391
_03145
Position (kb) 669
670
671 Strain fitness (log2 ratio) -2
-1
0
1
2 at 668.717 kb on + strand at 668.718 kb on - strand at 668.718 kb on - strand at 668.718 kb on - strand at 668.794 kb on - strand, within AO353_03125 at 668.883 kb on - strand, within AO353_03125 at 668.911 kb on + strand, within AO353_03125 at 668.911 kb on + strand, within AO353_03125 at 668.911 kb on + strand, within AO353_03125 at 668.912 kb on - strand, within AO353_03125 at 668.912 kb on - strand, within AO353_03125 at 669.043 kb on - strand, within AO353_03125 at 669.043 kb on - strand, within AO353_03125 at 669.236 kb on + strand, within AO353_03125 at 669.236 kb on + strand, within AO353_03125 at 669.387 kb on + strand, within AO353_03125 at 669.387 kb on + strand, within AO353_03125 at 669.387 kb on + strand, within AO353_03125 at 669.387 kb on + strand, within AO353_03125 at 669.388 kb on - strand, within AO353_03125 at 669.388 kb on - strand, within AO353_03125 at 669.388 kb on - strand, within AO353_03125 at 669.480 kb on - strand, within AO353_03125 at 669.616 kb on + strand at 669.616 kb on + strand at 669.617 kb on - strand at 669.617 kb on - strand at 669.617 kb on - strand at 669.680 kb on - strand at 669.698 kb on + strand at 669.965 kb on + strand, within AO353_03130 at 669.966 kb on - strand, within AO353_03130 at 670.115 kb on + strand, within AO353_03130 at 670.116 kb on - strand, within AO353_03130 at 670.142 kb on + strand, within AO353_03130 at 670.233 kb on + strand, within AO353_03130 at 670.234 kb on - strand, within AO353_03130 at 670.234 kb on - strand, within AO353_03130 at 670.234 kb on - strand, within AO353_03130 at 670.391 kb on - strand at 670.393 kb on + strand at 670.393 kb on + strand at 670.394 kb on - strand at 670.394 kb on - strand at 670.394 kb on - strand at 670.394 kb on - strand at 670.401 kb on - strand, within AO353_03135 at 670.438 kb on + strand, within AO353_03135 at 670.543 kb on + strand, within AO353_03135 at 670.543 kb on + strand, within AO353_03135 at 670.544 kb on - strand, within AO353_03135 at 670.627 kb on + strand, within AO353_03135 at 670.628 kb on - strand, within AO353_03135 at 670.628 kb on - strand, within AO353_03135 at 670.628 kb on - strand, within AO353_03135 at 670.628 kb on - strand, within AO353_03135 at 670.628 kb on - strand, within AO353_03135 at 670.669 kb on + strand at 670.670 kb on - strand at 670.670 kb on - strand at 670.670 kb on - strand at 670.670 kb on - strand at 670.670 kb on - strand at 670.742 kb on + strand, within AO353_03140 at 670.742 kb on + strand, within AO353_03140 at 670.742 kb on + strand, within AO353_03140 at 670.742 kb on + strand, within AO353_03140 at 670.743 kb on - strand, within AO353_03140 at 670.744 kb on + strand, within AO353_03140 at 670.744 kb on + strand, within AO353_03140 at 670.744 kb on + strand, within AO353_03140 at 670.744 kb on + strand, within AO353_03140 at 670.745 kb on - strand, within AO353_03140 at 670.745 kb on - strand, within AO353_03140 at 670.745 kb on - strand, within AO353_03140 at 670.930 kb on + strand, within AO353_03140 at 670.931 kb on - strand, within AO353_03140 at 670.991 kb on + strand at 670.991 kb on + strand at 670.991 kb on + strand at 670.992 kb on - strand at 670.992 kb on - strand at 670.992 kb on - strand at 670.992 kb on - strand at 670.992 kb on - strand at 671.015 kb on + strand at 671.015 kb on + strand at 671.015 kb on + strand at 671.015 kb on + strand at 671.015 kb on + strand at 671.016 kb on - strand at 671.058 kb on + strand at 671.058 kb on + strand at 671.059 kb on - strand at 671.059 kb on - strand at 671.059 kb on - strand at 671.059 kb on - strand at 671.059 kb on - strand at 671.129 kb on - strand at 671.178 kb on + strand at 671.179 kb on - strand at 671.218 kb on + strand at 671.225 kb on + strand at 671.225 kb on + strand at 671.225 kb on + strand at 671.225 kb on + strand at 671.225 kb on + strand at 671.226 kb on - strand at 671.226 kb on - strand at 671.226 kb on - strand at 671.226 kb on - strand at 671.272 kb on + strand at 671.273 kb on - strand at 671.273 kb on - strand at 671.276 kb on + strand at 671.276 kb on + strand at 671.277 kb on - strand at 671.277 kb on - strand at 671.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.004 mg/ml remove 668,717 + -0.6 668,718 - +2.6 668,718 - -1.3 668,718 - -1.0 668,794 - AO353_03125 0.13 +0.1 668,883 - AO353_03125 0.23 +0.3 668,911 + AO353_03125 0.26 -0.6 668,911 + AO353_03125 0.26 -0.7 668,911 + AO353_03125 0.26 +0.3 668,912 - AO353_03125 0.26 +0.4 668,912 - AO353_03125 0.26 +1.0 669,043 - AO353_03125 0.41 -0.6 669,043 - AO353_03125 0.41 +0.1 669,236 + AO353_03125 0.62 +0.3 669,236 + AO353_03125 0.62 +0.3 669,387 + AO353_03125 0.79 +0.7 669,387 + AO353_03125 0.79 -1.1 669,387 + AO353_03125 0.79 +0.6 669,387 + AO353_03125 0.79 +0.2 669,388 - AO353_03125 0.79 +2.7 669,388 - AO353_03125 0.79 -1.0 669,388 - AO353_03125 0.79 +0.7 669,480 - AO353_03125 0.89 +0.2 669,616 + -0.3 669,616 + -0.4 669,617 - -0.9 669,617 - +0.6 669,617 - -0.2 669,680 - -0.8 669,698 + -0.5 669,965 + AO353_03130 0.43 -1.3 669,966 - AO353_03130 0.44 +0.6 670,115 + AO353_03130 0.65 -0.5 670,116 - AO353_03130 0.65 -2.4 670,142 + AO353_03130 0.68 +0.0 670,233 + AO353_03130 0.81 +0.1 670,234 - AO353_03130 0.81 -2.4 670,234 - AO353_03130 0.81 +0.7 670,234 - AO353_03130 0.81 -0.7 670,391 - +0.1 670,393 + +0.3 670,393 + -0.9 670,394 - -1.3 670,394 - +0.0 670,394 - -1.1 670,394 - -2.3 670,401 - AO353_03135 0.11 -0.0 670,438 + AO353_03135 0.23 +1.0 670,543 + AO353_03135 0.54 +0.3 670,543 + AO353_03135 0.54 -0.3 670,544 - AO353_03135 0.54 -0.3 670,627 + AO353_03135 0.79 +1.7 670,628 - AO353_03135 0.80 +0.1 670,628 - AO353_03135 0.80 -0.5 670,628 - AO353_03135 0.80 -0.6 670,628 - AO353_03135 0.80 +0.6 670,628 - AO353_03135 0.80 +1.3 670,669 + +0.4 670,670 - +0.3 670,670 - -0.6 670,670 - +0.3 670,670 - -0.6 670,670 - -0.9 670,742 + AO353_03140 0.18 -0.8 670,742 + AO353_03140 0.18 -1.3 670,742 + AO353_03140 0.18 +1.1 670,742 + AO353_03140 0.18 -2.2 670,743 - AO353_03140 0.18 +1.0 670,744 + AO353_03140 0.18 +0.5 670,744 + AO353_03140 0.18 -0.6 670,744 + AO353_03140 0.18 +0.3 670,744 + AO353_03140 0.18 -0.5 670,745 - AO353_03140 0.19 +0.7 670,745 - AO353_03140 0.19 +0.7 670,745 - AO353_03140 0.19 -1.5 670,930 + AO353_03140 0.75 -0.6 670,931 - AO353_03140 0.75 +0.7 670,991 + +1.5 670,991 + -0.6 670,991 + +0.6 670,992 - -1.6 670,992 - +1.3 670,992 - -0.4 670,992 - -0.6 670,992 - +0.1 671,015 + +0.1 671,015 + -0.8 671,015 + -0.6 671,015 + -0.5 671,015 + -2.0 671,016 - -0.5 671,058 + -1.1 671,058 + +0.7 671,059 - +1.4 671,059 - -0.3 671,059 - -1.1 671,059 - +1.2 671,059 - -0.3 671,129 - -0.3 671,178 + -2.3 671,179 - -1.1 671,218 + -0.7 671,225 + -0.6 671,225 + -0.3 671,225 + -0.7 671,225 + +0.1 671,225 + +1.1 671,226 - -1.4 671,226 - -1.1 671,226 - +0.8 671,226 - -0.6 671,272 + +0.7 671,273 - +0.4 671,273 - +0.7 671,276 + +0.1 671,276 + +0.8 671,277 - +0.3 671,277 - +0.1 671,277 - +0.4
Or see this region's nucleotide sequence