Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02450

Experiment: Chloramphenicol 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02445 and AO353_02450 are separated by 47 nucleotidesAO353_02450 and AO353_02455 overlap by 8 nucleotides AO353_02445: AO353_02445 - diguanylate phosphodiesterase, at 521,597 to 523,372 _02445 AO353_02450: AO353_02450 - hypothetical protein, at 523,420 to 523,794 _02450 AO353_02455: AO353_02455 - type IV secretion protein Rhs, at 523,787 to 528,595 _02455 Position (kb) 523 524Strain fitness (log2 ratio) -2 -1 0 1 2 3at 522.429 kb on + strand, within AO353_02445at 522.430 kb on - strand, within AO353_02445at 522.596 kb on - strand, within AO353_02445at 522.734 kb on + strand, within AO353_02445at 522.735 kb on - strand, within AO353_02445at 522.735 kb on - strand, within AO353_02445at 522.867 kb on + strand, within AO353_02445at 522.867 kb on + strand, within AO353_02445at 522.867 kb on + strand, within AO353_02445at 522.867 kb on + strandat 522.867 kb on + strand, within AO353_02445at 522.867 kb on + strand, within AO353_02445at 522.868 kb on - strand, within AO353_02445at 522.868 kb on - strand, within AO353_02445at 522.896 kb on + strand, within AO353_02445at 522.897 kb on - strand, within AO353_02445at 522.932 kb on - strand, within AO353_02445at 522.935 kb on + strand, within AO353_02445at 522.935 kb on + strand, within AO353_02445at 522.936 kb on - strand, within AO353_02445at 522.936 kb on - strand, within AO353_02445at 522.936 kb on - strand, within AO353_02445at 522.936 kb on - strand, within AO353_02445at 522.936 kb on - strand, within AO353_02445at 522.936 kb on - strand, within AO353_02445at 523.124 kb on + strand, within AO353_02445at 523.125 kb on - strand, within AO353_02445at 523.166 kb on - strand, within AO353_02445at 523.227 kb on + strandat 523.227 kb on + strandat 523.227 kb on + strandat 523.227 kb on + strandat 523.228 kb on - strandat 523.228 kb on - strandat 523.228 kb on - strandat 523.228 kb on - strandat 523.321 kb on + strandat 523.321 kb on + strandat 523.322 kb on - strandat 523.322 kb on - strandat 523.322 kb on - strandat 523.325 kb on + strandat 523.325 kb on + strandat 523.325 kb on + strandat 523.326 kb on - strandat 523.326 kb on - strandat 523.326 kb on - strandat 523.336 kb on + strandat 523.363 kb on + strandat 523.363 kb on + strandat 523.450 kb on + strandat 523.451 kb on - strandat 523.541 kb on - strand, within AO353_02450at 523.544 kb on + strand, within AO353_02450at 523.545 kb on - strand, within AO353_02450at 523.658 kb on + strand, within AO353_02450at 523.659 kb on - strand, within AO353_02450at 523.659 kb on - strand, within AO353_02450at 523.659 kb on - strand, within AO353_02450at 523.670 kb on - strand, within AO353_02450at 523.677 kb on + strand, within AO353_02450at 523.678 kb on - strand, within AO353_02450at 523.691 kb on + strand, within AO353_02450at 523.691 kb on + strand, within AO353_02450at 523.692 kb on - strand, within AO353_02450at 523.692 kb on - strand, within AO353_02450at 523.692 kb on - strand, within AO353_02450at 523.707 kb on + strand, within AO353_02450at 523.707 kb on + strand, within AO353_02450at 523.707 kb on + strand, within AO353_02450at 523.708 kb on - strand, within AO353_02450at 523.708 kb on - strand, within AO353_02450at 523.708 kb on - strand, within AO353_02450at 523.708 kb on - strand, within AO353_02450at 523.708 kb on - strand, within AO353_02450at 523.768 kb on + strandat 523.783 kb on + strandat 523.783 kb on + strandat 523.784 kb on - strandat 523.784 kb on - strandat 523.784 kb on - strandat 523.788 kb on + strandat 523.789 kb on - strandat 523.789 kb on - strandat 523.814 kb on - strandat 523.814 kb on - strandat 523.949 kb on + strandat 524.031 kb on + strandat 524.031 kb on + strandat 524.140 kb on + strandat 524.141 kb on - strandat 524.206 kb on + strandat 524.206 kb on + strandat 524.206 kb on + strandat 524.206 kb on + strandat 524.206 kb on + strandat 524.207 kb on - strandat 524.207 kb on - strandat 524.207 kb on - strandat 524.207 kb on - strandat 524.268 kb on + strand, within AO353_02455at 524.269 kb on - strand, within AO353_02455at 524.269 kb on - strand, within AO353_02455at 524.269 kb on - strand, within AO353_02455at 524.269 kb on - strand, within AO353_02455at 524.274 kb on + strand, within AO353_02455at 524.340 kb on + strand, within AO353_02455at 524.340 kb on + strand, within AO353_02455at 524.340 kb on + strand, within AO353_02455at 524.341 kb on - strand, within AO353_02455at 524.358 kb on + strand, within AO353_02455at 524.359 kb on - strand, within AO353_02455at 524.359 kb on - strand, within AO353_02455at 524.359 kb on - strand, within AO353_02455at 524.385 kb on + strand, within AO353_02455at 524.385 kb on + strand, within AO353_02455at 524.385 kb on + strand, within AO353_02455at 524.385 kb on + strand, within AO353_02455at 524.385 kb on + strand, within AO353_02455at 524.385 kb on + strand, within AO353_02455at 524.386 kb on - strand, within AO353_02455at 524.467 kb on - strand, within AO353_02455at 524.467 kb on - strand, within AO353_02455at 524.467 kb on - strand, within AO353_02455at 524.467 kb on - strand, within AO353_02455at 524.467 kb on - strand, within AO353_02455at 524.542 kb on - strand, within AO353_02455at 524.542 kb on - strand, within AO353_02455at 524.542 kb on - strand, within AO353_02455at 524.542 kb on - strand, within AO353_02455at 524.542 kb on - strand, within AO353_02455at 524.542 kb on - strand, within AO353_02455at 524.542 kb on - strand, within AO353_02455

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.004 mg/ml
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522,429 + AO353_02445 0.47 -0.7
522,430 - AO353_02445 0.47 +0.3
522,596 - AO353_02445 0.56 +0.0
522,734 + AO353_02445 0.64 +0.0
522,735 - AO353_02445 0.64 +0.6
522,735 - AO353_02445 0.64 +0.8
522,867 + AO353_02445 0.72 +2.1
522,867 + AO353_02445 0.72 +0.6
522,867 + AO353_02445 0.72 +0.9
522,867 + +1.4
522,867 + AO353_02445 0.72 +1.6
522,867 + AO353_02445 0.72 +1.4
522,868 - AO353_02445 0.72 +0.0
522,868 - AO353_02445 0.72 -0.2
522,896 + AO353_02445 0.73 -0.5
522,897 - AO353_02445 0.73 +1.2
522,932 - AO353_02445 0.75 +0.3
522,935 + AO353_02445 0.75 -1.4
522,935 + AO353_02445 0.75 +0.7
522,936 - AO353_02445 0.75 +0.8
522,936 - AO353_02445 0.75 -0.7
522,936 - AO353_02445 0.75 -0.2
522,936 - AO353_02445 0.75 -0.3
522,936 - AO353_02445 0.75 +0.1
522,936 - AO353_02445 0.75 +0.2
523,124 + AO353_02445 0.86 -0.1
523,125 - AO353_02445 0.86 -0.8
523,166 - AO353_02445 0.88 +0.5
523,227 + -1.7
523,227 + -0.4
523,227 + -0.1
523,227 + +0.1
523,228 - -2.4
523,228 - +0.0
523,228 - -1.0
523,228 - -0.9
523,321 + -0.4
523,321 + -1.0
523,322 - +0.3
523,322 - -0.3
523,322 - +0.5
523,325 + -2.5
523,325 + +0.1
523,325 + +0.2
523,326 - +0.6
523,326 - -1.5
523,326 - +3.2
523,336 + +1.3
523,363 + +0.0
523,363 + -0.5
523,450 + -0.4
523,451 - +0.8
523,541 - AO353_02450 0.32 -0.5
523,544 + AO353_02450 0.33 -1.0
523,545 - AO353_02450 0.33 -0.4
523,658 + AO353_02450 0.63 -1.2
523,659 - AO353_02450 0.64 +0.6
523,659 - AO353_02450 0.64 -1.7
523,659 - AO353_02450 0.64 -0.5
523,670 - AO353_02450 0.67 +0.0
523,677 + AO353_02450 0.69 -0.2
523,678 - AO353_02450 0.69 -0.7
523,691 + AO353_02450 0.72 +0.0
523,691 + AO353_02450 0.72 -1.6
523,692 - AO353_02450 0.73 +0.2
523,692 - AO353_02450 0.73 -0.1
523,692 - AO353_02450 0.73 -0.5
523,707 + AO353_02450 0.77 -0.4
523,707 + AO353_02450 0.77 -1.3
523,707 + AO353_02450 0.77 +0.0
523,708 - AO353_02450 0.77 +1.3
523,708 - AO353_02450 0.77 -0.4
523,708 - AO353_02450 0.77 -1.0
523,708 - AO353_02450 0.77 -2.5
523,708 - AO353_02450 0.77 +0.3
523,768 + +1.2
523,783 + -0.7
523,783 + +0.6
523,784 - -0.8
523,784 - -0.2
523,784 - +1.4
523,788 + +0.2
523,789 - +0.0
523,789 - +0.7
523,814 - -0.7
523,814 - -1.0
523,949 + +0.5
524,031 + +1.4
524,031 + -0.4
524,140 + +0.2
524,141 - +1.0
524,206 + +0.6
524,206 + +0.7
524,206 + -1.0
524,206 + -0.7
524,206 + -1.2
524,207 - -1.8
524,207 - +1.4
524,207 - -0.5
524,207 - +0.5
524,268 + AO353_02455 0.10 +0.6
524,269 - AO353_02455 0.10 +1.0
524,269 - AO353_02455 0.10 -0.4
524,269 - AO353_02455 0.10 -0.2
524,269 - AO353_02455 0.10 -0.4
524,274 + AO353_02455 0.10 +0.2
524,340 + AO353_02455 0.11 +1.6
524,340 + AO353_02455 0.11 -1.0
524,340 + AO353_02455 0.11 -0.1
524,341 - AO353_02455 0.12 -0.1
524,358 + AO353_02455 0.12 +1.5
524,359 - AO353_02455 0.12 -0.4
524,359 - AO353_02455 0.12 +0.0
524,359 - AO353_02455 0.12 +0.3
524,385 + AO353_02455 0.12 -1.0
524,385 + AO353_02455 0.12 +0.5
524,385 + AO353_02455 0.12 -0.4
524,385 + AO353_02455 0.12 -0.7
524,385 + AO353_02455 0.12 -0.1
524,385 + AO353_02455 0.12 -0.6
524,386 - AO353_02455 0.12 -1.0
524,467 - AO353_02455 0.14 -0.7
524,467 - AO353_02455 0.14 +0.2
524,467 - AO353_02455 0.14 +0.8
524,467 - AO353_02455 0.14 +1.3
524,467 - AO353_02455 0.14 +1.0
524,542 - AO353_02455 0.16 -2.2
524,542 - AO353_02455 0.16 -0.7
524,542 - AO353_02455 0.16 -1.0
524,542 - AO353_02455 0.16 -0.4
524,542 - AO353_02455 0.16 -0.2
524,542 - AO353_02455 0.16 -2.1
524,542 - AO353_02455 0.16 -0.9

Or see this region's nucleotide sequence