Experiment: Chloramphenicol 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02340 and AO353_02345 are separated by 188 nucleotides AO353_02345 and AO353_02350 are separated by 520 nucleotides
AO353_02340: AO353_02340 - hypothetical protein, at 496,653 to 497,960
_02340
AO353_02345: AO353_02345 - purine permease, at 498,149 to 499,507
_02345
AO353_02350: AO353_02350 - hypothetical protein, at 500,028 to 500,813
_02350
Position (kb) 498
499
500 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 497.169 kb on + strand, within AO353_02340 at 497.170 kb on - strand, within AO353_02340 at 497.170 kb on - strand, within AO353_02340 at 497.211 kb on - strand, within AO353_02340 at 497.328 kb on + strand, within AO353_02340 at 497.328 kb on + strand, within AO353_02340 at 497.328 kb on + strand, within AO353_02340 at 497.328 kb on + strand, within AO353_02340 at 497.328 kb on + strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.329 kb on - strand, within AO353_02340 at 497.382 kb on + strand, within AO353_02340 at 497.382 kb on + strand, within AO353_02340 at 497.383 kb on - strand, within AO353_02340 at 497.383 kb on - strand, within AO353_02340 at 497.383 kb on - strand, within AO353_02340 at 497.395 kb on - strand, within AO353_02340 at 497.448 kb on + strand, within AO353_02340 at 497.448 kb on + strand, within AO353_02340 at 497.448 kb on + strand, within AO353_02340 at 497.448 kb on + strand, within AO353_02340 at 497.448 kb on + strand, within AO353_02340 at 497.449 kb on - strand, within AO353_02340 at 497.526 kb on + strand, within AO353_02340 at 497.526 kb on + strand, within AO353_02340 at 497.527 kb on - strand, within AO353_02340 at 497.716 kb on + strand, within AO353_02340 at 497.716 kb on + strand, within AO353_02340 at 497.716 kb on + strand, within AO353_02340 at 497.716 kb on + strand, within AO353_02340 at 497.716 kb on + strand, within AO353_02340 at 497.716 kb on + strand, within AO353_02340 at 497.717 kb on - strand, within AO353_02340 at 497.717 kb on - strand, within AO353_02340 at 497.717 kb on - strand, within AO353_02340 at 497.717 kb on - strand, within AO353_02340 at 497.958 kb on + strand at 497.958 kb on + strand at 497.958 kb on + strand at 497.958 kb on + strand at 497.958 kb on + strand at 497.958 kb on + strand at 497.958 kb on + strand at 497.958 kb on + strand at 497.958 kb on + strand at 497.958 kb on + strand at 497.959 kb on - strand at 497.959 kb on - strand at 497.959 kb on - strand at 497.959 kb on - strand at 497.959 kb on - strand at 497.959 kb on - strand at 497.959 kb on - strand at 497.959 kb on - strand at 497.959 kb on - strand at 497.959 kb on - strand at 497.959 kb on - strand at 497.959 kb on - strand at 497.965 kb on + strand at 497.965 kb on + strand at 497.965 kb on + strand at 497.965 kb on + strand at 497.965 kb on + strand at 497.965 kb on + strand at 497.966 kb on - strand at 497.966 kb on - strand at 498.103 kb on - strand at 498.103 kb on - strand at 498.127 kb on + strand at 498.127 kb on + strand at 498.128 kb on - strand at 498.128 kb on - strand at 498.128 kb on - strand at 498.251 kb on + strand at 498.251 kb on + strand at 498.252 kb on - strand at 498.252 kb on - strand at 498.252 kb on - strand at 498.252 kb on - strand at 498.252 kb on - strand at 498.448 kb on - strand, within AO353_02345 at 498.448 kb on - strand, within AO353_02345 at 498.448 kb on - strand, within AO353_02345 at 498.674 kb on + strand, within AO353_02345 at 498.697 kb on - strand, within AO353_02345 at 498.697 kb on - strand, within AO353_02345 at 498.779 kb on + strand, within AO353_02345 at 498.779 kb on + strand, within AO353_02345 at 498.779 kb on + strand, within AO353_02345 at 498.780 kb on - strand, within AO353_02345 at 498.780 kb on - strand, within AO353_02345 at 498.780 kb on - strand, within AO353_02345 at 499.081 kb on + strand, within AO353_02345 at 499.452 kb on + strand at 499.452 kb on + strand at 499.453 kb on - strand at 499.512 kb on + strand at 499.512 kb on + strand at 499.569 kb on + strand at 499.570 kb on - strand at 499.595 kb on + strand at 499.596 kb on - strand at 499.630 kb on - strand at 499.635 kb on + strand at 499.635 kb on + strand at 499.635 kb on + strand at 499.635 kb on + strand at 499.636 kb on - strand at 499.636 kb on - strand at 499.719 kb on + strand at 499.719 kb on + strand at 499.720 kb on - strand at 499.748 kb on - strand at 499.765 kb on + strand at 499.825 kb on + strand at 499.825 kb on + strand at 499.825 kb on + strand at 499.825 kb on + strand at 499.947 kb on + strand at 499.947 kb on + strand at 500.010 kb on + strand at 500.010 kb on + strand at 500.010 kb on + strand at 500.011 kb on - strand at 500.036 kb on + strand at 500.036 kb on + strand at 500.036 kb on + strand at 500.036 kb on + strand at 500.036 kb on + strand at 500.036 kb on + strand at 500.036 kb on + strand at 500.037 kb on - strand at 500.037 kb on - strand at 500.037 kb on - strand at 500.046 kb on - strand at 500.130 kb on + strand, within AO353_02350 at 500.130 kb on + strand, within AO353_02350 at 500.130 kb on + strand, within AO353_02350 at 500.130 kb on + strand, within AO353_02350 at 500.130 kb on + strand, within AO353_02350 at 500.130 kb on + strand, within AO353_02350 at 500.131 kb on - strand, within AO353_02350 at 500.131 kb on - strand, within AO353_02350 at 500.131 kb on - strand, within AO353_02350 at 500.131 kb on - strand, within AO353_02350 at 500.131 kb on - strand, within AO353_02350 at 500.208 kb on + strand, within AO353_02350 at 500.208 kb on + strand, within AO353_02350 at 500.244 kb on + strand, within AO353_02350 at 500.245 kb on - strand, within AO353_02350 at 500.245 kb on - strand, within AO353_02350 at 500.245 kb on - strand, within AO353_02350 at 500.265 kb on + strand, within AO353_02350 at 500.266 kb on - strand, within AO353_02350 at 500.266 kb on - strand, within AO353_02350 at 500.277 kb on - strand, within AO353_02350 at 500.283 kb on + strand, within AO353_02350 at 500.283 kb on + strand, within AO353_02350 at 500.283 kb on + strand, within AO353_02350 at 500.283 kb on + strand, within AO353_02350 at 500.283 kb on + strand, within AO353_02350 at 500.283 kb on + strand, within AO353_02350 at 500.283 kb on + strand, within AO353_02350 at 500.283 kb on + strand, within AO353_02350 at 500.283 kb on + strand, within AO353_02350 at 500.283 kb on + strand, within AO353_02350 at 500.283 kb on + strand, within AO353_02350 at 500.283 kb on + strand, within AO353_02350 at 500.283 kb on + strand, within AO353_02350 at 500.283 kb on + strand, within AO353_02350 at 500.283 kb on + strand, within AO353_02350 at 500.284 kb on - strand, within AO353_02350 at 500.284 kb on - strand, within AO353_02350 at 500.284 kb on - strand, within AO353_02350 at 500.284 kb on - strand at 500.284 kb on - strand, within AO353_02350 at 500.284 kb on - strand, within AO353_02350 at 500.284 kb on - strand, within AO353_02350 at 500.284 kb on - strand, within AO353_02350 at 500.284 kb on - strand, within AO353_02350 at 500.284 kb on - strand, within AO353_02350 at 500.284 kb on - strand, within AO353_02350 at 500.286 kb on + strand, within AO353_02350 at 500.286 kb on + strand, within AO353_02350 at 500.286 kb on + strand, within AO353_02350 at 500.286 kb on + strand, within AO353_02350 at 500.287 kb on - strand, within AO353_02350 at 500.287 kb on - strand, within AO353_02350 at 500.287 kb on - strand, within AO353_02350 at 500.287 kb on - strand, within AO353_02350 at 500.287 kb on - strand, within AO353_02350 at 500.379 kb on + strand, within AO353_02350 at 500.379 kb on + strand, within AO353_02350 at 500.380 kb on - strand, within AO353_02350 at 500.380 kb on - strand, within AO353_02350 at 500.409 kb on + strand, within AO353_02350 at 500.409 kb on + strand, within AO353_02350 at 500.409 kb on + strand, within AO353_02350 at 500.409 kb on + strand, within AO353_02350 at 500.409 kb on + strand, within AO353_02350 at 500.454 kb on + strand, within AO353_02350 at 500.454 kb on + strand, within AO353_02350 at 500.454 kb on + strand, within AO353_02350 at 500.455 kb on - strand, within AO353_02350 at 500.455 kb on - strand, within AO353_02350 at 500.472 kb on + strand, within AO353_02350 at 500.472 kb on + strand, within AO353_02350 at 500.472 kb on + strand, within AO353_02350 at 500.473 kb on - strand, within AO353_02350
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.004 mg/ml remove 497,169 + AO353_02340 0.39 +0.3 497,170 - AO353_02340 0.40 -1.0 497,170 - AO353_02340 0.40 -0.4 497,211 - AO353_02340 0.43 +1.2 497,328 + AO353_02340 0.52 -0.1 497,328 + AO353_02340 0.52 +3.2 497,328 + AO353_02340 0.52 -0.9 497,328 + AO353_02340 0.52 +0.7 497,328 + AO353_02340 0.52 +0.2 497,329 - AO353_02340 0.52 -0.1 497,329 - AO353_02340 0.52 +0.4 497,329 - AO353_02340 0.52 +1.0 497,329 - AO353_02340 0.52 -0.8 497,329 - AO353_02340 0.52 -0.6 497,329 - AO353_02340 0.52 +0.1 497,329 - AO353_02340 0.52 +0.0 497,329 - AO353_02340 0.52 +0.5 497,329 - AO353_02340 0.52 -0.2 497,329 - AO353_02340 0.52 -1.2 497,329 - AO353_02340 0.52 -0.4 497,329 - AO353_02340 0.52 +0.4 497,329 - AO353_02340 0.52 +0.6 497,382 + AO353_02340 0.56 -2.2 497,382 + AO353_02340 0.56 +0.1 497,383 - AO353_02340 0.56 -0.4 497,383 - AO353_02340 0.56 +0.1 497,383 - AO353_02340 0.56 +0.0 497,395 - AO353_02340 0.57 -0.2 497,448 + AO353_02340 0.61 +0.8 497,448 + AO353_02340 0.61 -1.7 497,448 + AO353_02340 0.61 -0.5 497,448 + AO353_02340 0.61 -1.4 497,448 + AO353_02340 0.61 +0.6 497,449 - AO353_02340 0.61 -0.7 497,526 + AO353_02340 0.67 +0.9 497,526 + AO353_02340 0.67 +0.2 497,527 - AO353_02340 0.67 -0.2 497,716 + AO353_02340 0.81 -0.1 497,716 + AO353_02340 0.81 -1.3 497,716 + AO353_02340 0.81 -1.2 497,716 + AO353_02340 0.81 -1.0 497,716 + AO353_02340 0.81 -0.2 497,716 + AO353_02340 0.81 -0.2 497,717 - AO353_02340 0.81 -0.3 497,717 - AO353_02340 0.81 +1.6 497,717 - AO353_02340 0.81 +0.4 497,717 - AO353_02340 0.81 +0.4 497,958 + -0.4 497,958 + -0.4 497,958 + -0.2 497,958 + -0.9 497,958 + +0.1 497,958 + +0.6 497,958 + -0.3 497,958 + -0.6 497,958 + -1.0 497,958 + +0.0 497,959 - -0.4 497,959 - +0.2 497,959 - +0.8 497,959 - +0.0 497,959 - +0.0 497,959 - +1.4 497,959 - -1.4 497,959 - +0.7 497,959 - -0.0 497,959 - -0.4 497,959 - -0.3 497,959 - -2.0 497,965 + -0.3 497,965 + -1.2 497,965 + +0.6 497,965 + +0.6 497,965 + +0.0 497,965 + -1.0 497,966 - +1.2 497,966 - -0.3 498,103 - -0.3 498,103 - -1.1 498,127 + -1.0 498,127 + -0.6 498,128 - -1.0 498,128 - +0.6 498,128 - +0.2 498,251 + +0.6 498,251 + +0.4 498,252 - -2.0 498,252 - +1.0 498,252 - -1.0 498,252 - +1.9 498,252 - -0.2 498,448 - AO353_02345 0.22 -1.7 498,448 - AO353_02345 0.22 +0.6 498,448 - AO353_02345 0.22 +0.3 498,674 + AO353_02345 0.39 +1.4 498,697 - AO353_02345 0.40 -1.0 498,697 - AO353_02345 0.40 -0.8 498,779 + AO353_02345 0.46 -0.8 498,779 + AO353_02345 0.46 -0.4 498,779 + AO353_02345 0.46 -1.6 498,780 - AO353_02345 0.46 -0.2 498,780 - AO353_02345 0.46 -0.4 498,780 - AO353_02345 0.46 -0.7 499,081 + AO353_02345 0.69 -0.4 499,452 + -0.4 499,452 + -1.2 499,453 - +1.0 499,512 + +0.0 499,512 + +2.1 499,569 + -0.4 499,570 - +0.6 499,595 + -0.7 499,596 - +1.3 499,630 - -0.1 499,635 + -0.0 499,635 + -0.7 499,635 + -0.6 499,635 + +0.3 499,636 - -0.4 499,636 - -0.8 499,719 + -0.4 499,719 + +0.2 499,720 - +0.3 499,748 - +0.5 499,765 + +0.3 499,825 + -0.2 499,825 + +0.3 499,825 + +0.3 499,825 + -0.1 499,947 + -0.4 499,947 + -0.4 500,010 + +0.4 500,010 + +0.9 500,010 + +0.3 500,011 - -0.5 500,036 + +1.0 500,036 + -0.2 500,036 + +0.0 500,036 + +0.2 500,036 + -0.8 500,036 + -0.4 500,036 + -0.7 500,037 - -1.4 500,037 - +1.0 500,037 - +0.8 500,046 - -0.2 500,130 + AO353_02350 0.13 +0.3 500,130 + AO353_02350 0.13 -0.9 500,130 + AO353_02350 0.13 +0.2 500,130 + AO353_02350 0.13 +0.5 500,130 + AO353_02350 0.13 -1.1 500,130 + AO353_02350 0.13 -0.8 500,131 - AO353_02350 0.13 +1.4 500,131 - AO353_02350 0.13 -0.3 500,131 - AO353_02350 0.13 -0.0 500,131 - AO353_02350 0.13 -0.1 500,131 - AO353_02350 0.13 -0.7 500,208 + AO353_02350 0.23 -0.3 500,208 + AO353_02350 0.23 -0.9 500,244 + AO353_02350 0.27 -2.2 500,245 - AO353_02350 0.28 +0.4 500,245 - AO353_02350 0.28 +0.8 500,245 - AO353_02350 0.28 +1.0 500,265 + AO353_02350 0.30 +0.6 500,266 - AO353_02350 0.30 +1.9 500,266 - AO353_02350 0.30 -1.2 500,277 - AO353_02350 0.32 -0.5 500,283 + AO353_02350 0.32 +0.0 500,283 + AO353_02350 0.32 -1.6 500,283 + AO353_02350 0.32 +0.4 500,283 + AO353_02350 0.32 +0.4 500,283 + AO353_02350 0.32 -0.1 500,283 + AO353_02350 0.32 -1.4 500,283 + AO353_02350 0.32 -1.1 500,283 + AO353_02350 0.32 -0.6 500,283 + AO353_02350 0.32 -1.0 500,283 + AO353_02350 0.32 +0.5 500,283 + AO353_02350 0.32 +0.8 500,283 + AO353_02350 0.32 +1.0 500,283 + AO353_02350 0.32 -0.3 500,283 + AO353_02350 0.32 -0.7 500,283 + AO353_02350 0.32 +0.1 500,284 - AO353_02350 0.33 +0.4 500,284 - AO353_02350 0.33 -0.6 500,284 - AO353_02350 0.33 +0.0 500,284 - +0.6 500,284 - AO353_02350 0.33 -0.6 500,284 - AO353_02350 0.33 +0.3 500,284 - AO353_02350 0.33 +1.6 500,284 - AO353_02350 0.33 +1.0 500,284 - AO353_02350 0.33 -0.7 500,284 - AO353_02350 0.33 +0.4 500,284 - AO353_02350 0.33 -0.6 500,286 + AO353_02350 0.33 +0.1 500,286 + AO353_02350 0.33 +1.6 500,286 + AO353_02350 0.33 +0.3 500,286 + AO353_02350 0.33 -0.4 500,287 - AO353_02350 0.33 +0.7 500,287 - AO353_02350 0.33 +0.2 500,287 - AO353_02350 0.33 +0.3 500,287 - AO353_02350 0.33 -0.5 500,287 - AO353_02350 0.33 -2.1 500,379 + AO353_02350 0.45 -1.6 500,379 + AO353_02350 0.45 -0.1 500,380 - AO353_02350 0.45 -0.6 500,380 - AO353_02350 0.45 +0.3 500,409 + AO353_02350 0.48 +0.6 500,409 + AO353_02350 0.48 -1.6 500,409 + AO353_02350 0.48 +0.8 500,409 + AO353_02350 0.48 -1.2 500,409 + AO353_02350 0.48 +0.0 500,454 + AO353_02350 0.54 +0.3 500,454 + AO353_02350 0.54 +0.0 500,454 + AO353_02350 0.54 -0.8 500,455 - AO353_02350 0.54 -0.4 500,455 - AO353_02350 0.54 -0.0 500,472 + AO353_02350 0.56 -2.4 500,472 + AO353_02350 0.56 -2.3 500,472 + AO353_02350 0.56 +0.7 500,473 - AO353_02350 0.57 -0.6
Or see this region's nucleotide sequence