Experiment: Chloramphenicol 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02270 and AO353_02275 are separated by 132 nucleotides AO353_02275 and AO353_02280 are separated by 75 nucleotides AO353_02280 and AO353_02285 are separated by 77 nucleotides AO353_02285 and AO353_02290 are separated by 103 nucleotides
AO353_02270: AO353_02270 - isochorismatase, at 485,393 to 485,983
_02270
AO353_02275: AO353_02275 - hypothetical protein, at 486,116 to 486,436
_02275
AO353_02280: AO353_02280 - DNA mismatch repair protein MutS, at 486,512 to 487,069
_02280
AO353_02285: AO353_02285 - GTP cyclohydrolase, at 487,147 to 487,692
_02285
AO353_02290: AO353_02290 - glutaredoxin, at 487,796 to 488,167
_02290
Position (kb) 486
487
488 Strain fitness (log2 ratio) -1
0
1 at 485.542 kb on + strand, within AO353_02270 at 485.595 kb on + strand, within AO353_02270 at 485.595 kb on + strand, within AO353_02270 at 485.595 kb on + strand at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.803 kb on + strand, within AO353_02270 at 485.804 kb on - strand, within AO353_02270 at 485.804 kb on - strand, within AO353_02270 at 486.052 kb on + strand at 486.341 kb on + strand, within AO353_02275 at 486.341 kb on + strand, within AO353_02275 at 486.341 kb on + strand, within AO353_02275 at 486.341 kb on + strand, within AO353_02275 at 486.341 kb on + strand, within AO353_02275 at 486.341 kb on + strand, within AO353_02275 at 486.342 kb on - strand, within AO353_02275 at 486.342 kb on - strand, within AO353_02275 at 486.342 kb on - strand, within AO353_02275 at 486.342 kb on - strand, within AO353_02275 at 486.342 kb on - strand, within AO353_02275 at 486.342 kb on - strand, within AO353_02275 at 486.906 kb on + strand, within AO353_02280 at 486.906 kb on + strand, within AO353_02280 at 486.906 kb on + strand, within AO353_02280 at 486.906 kb on + strand, within AO353_02280 at 487.025 kb on + strand at 487.025 kb on + strand at 487.025 kb on + strand at 487.026 kb on - strand at 487.026 kb on - strand at 487.026 kb on - strand at 487.026 kb on - strand at 487.026 kb on - strand at 487.067 kb on + strand at 487.067 kb on + strand at 487.068 kb on - strand at 487.068 kb on - strand at 487.690 kb on + strand at 487.690 kb on + strand at 487.690 kb on + strand at 487.690 kb on + strand at 487.691 kb on - strand at 487.691 kb on - strand at 487.691 kb on - strand at 487.701 kb on - strand at 487.754 kb on + strand at 487.755 kb on - strand at 487.755 kb on - strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.792 kb on + strand at 487.792 kb on + strand at 487.792 kb on + strand at 487.792 kb on + strand at 487.793 kb on - strand at 487.793 kb on - strand at 487.793 kb on - strand at 487.800 kb on + strand at 487.800 kb on + strand at 487.801 kb on - strand at 487.801 kb on - strand at 487.801 kb on - strand at 487.804 kb on - strand at 487.804 kb on - strand at 487.932 kb on - strand, within AO353_02290 at 487.932 kb on - strand, within AO353_02290
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.004 mg/ml remove 485,542 + AO353_02270 0.25 -0.7 485,595 + AO353_02270 0.34 +0.9 485,595 + AO353_02270 0.34 +1.3 485,595 + +0.0 485,596 - AO353_02270 0.34 -1.3 485,596 - AO353_02270 0.34 +0.3 485,596 - AO353_02270 0.34 -1.4 485,596 - AO353_02270 0.34 +0.4 485,596 - AO353_02270 0.34 +0.8 485,596 - AO353_02270 0.34 +0.7 485,596 - AO353_02270 0.34 -0.4 485,596 - AO353_02270 0.34 -0.2 485,596 - AO353_02270 0.34 +1.2 485,803 + AO353_02270 0.69 +0.1 485,804 - AO353_02270 0.70 +1.2 485,804 - AO353_02270 0.70 +0.3 486,052 + -0.8 486,341 + AO353_02275 0.70 -1.5 486,341 + AO353_02275 0.70 -1.0 486,341 + AO353_02275 0.70 -0.2 486,341 + AO353_02275 0.70 -1.1 486,341 + AO353_02275 0.70 +0.5 486,341 + AO353_02275 0.70 -0.3 486,342 - AO353_02275 0.70 +0.0 486,342 - AO353_02275 0.70 -0.3 486,342 - AO353_02275 0.70 +0.6 486,342 - AO353_02275 0.70 +1.6 486,342 - AO353_02275 0.70 -0.6 486,342 - AO353_02275 0.70 +0.0 486,906 + AO353_02280 0.71 -0.9 486,906 + AO353_02280 0.71 -0.9 486,906 + AO353_02280 0.71 -0.1 486,906 + AO353_02280 0.71 -1.1 487,025 + -0.1 487,025 + -0.6 487,025 + +0.0 487,026 - +0.1 487,026 - -0.3 487,026 - +0.3 487,026 - +0.1 487,026 - +0.3 487,067 + -0.6 487,067 + +0.2 487,068 - -0.4 487,068 - +0.4 487,690 + -0.1 487,690 + -0.4 487,690 + -0.3 487,690 + +1.6 487,691 - +0.7 487,691 - -1.0 487,691 - +0.6 487,701 - -0.4 487,754 + +0.0 487,755 - +0.0 487,755 - -0.4 487,790 + +0.6 487,790 + -0.4 487,790 + -1.2 487,790 + +0.1 487,790 + +0.0 487,790 + -0.6 487,790 + +0.6 487,790 + -0.1 487,790 + -0.5 487,791 - -1.4 487,791 - -1.6 487,791 - -0.2 487,791 - +0.1 487,791 - +0.2 487,791 - +0.5 487,791 - -1.0 487,791 - -0.4 487,791 - -0.1 487,791 - -1.0 487,791 - -1.7 487,791 - +1.1 487,792 + +0.9 487,792 + +0.1 487,792 + +0.6 487,792 + -1.0 487,793 - -0.9 487,793 - -0.1 487,793 - -0.5 487,800 + +1.0 487,800 + +0.3 487,801 - -0.2 487,801 - -1.0 487,801 - +1.6 487,804 - -0.6 487,804 - +0.3 487,932 - AO353_02290 0.37 +0.7 487,932 - AO353_02290 0.37 +0.4
Or see this region's nucleotide sequence