Experiment: Chloramphenicol 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01180 and AO353_01185 are separated by 302 nucleotides AO353_01185 and AO353_01190 are separated by 211 nucleotides AO353_01190 and AO353_01195 are separated by 137 nucleotides AO353_01195 and AO353_01200 are separated by 41 nucleotides
AO353_01180: AO353_01180 - hypothetical protein, at 261,114 to 262,523
_01180
AO353_01185: AO353_01185 - superfamily II DNA/RNA helicase, SNF2 family protein, at 262,826 to 263,167
_01185
AO353_01190: AO353_01190 - hypothetical protein, at 263,379 to 263,615
_01190
AO353_01195: AO353_01195 - hypothetical protein, at 263,753 to 264,358
_01195
AO353_01200: AO353_01200 - hypothetical protein, at 264,400 to 264,654
_01200
Position (kb) 263
264 Strain fitness (log2 ratio) -2
-1
0
1
2 at 262.389 kb on + strand at 262.389 kb on + strand at 262.390 kb on - strand at 262.390 kb on - strand at 262.495 kb on + strand at 262.495 kb on + strand at 262.496 kb on - strand at 262.510 kb on + strand at 262.510 kb on + strand at 262.510 kb on + strand at 262.511 kb on - strand at 262.511 kb on - strand at 262.511 kb on - strand at 262.529 kb on - strand at 262.588 kb on + strand at 262.588 kb on + strand at 262.588 kb on + strand at 262.588 kb on + strand at 262.588 kb on + strand at 262.589 kb on - strand at 262.589 kb on - strand at 262.591 kb on + strand at 262.591 kb on + strand at 262.591 kb on + strand at 262.643 kb on - strand at 262.643 kb on - strand at 262.821 kb on + strand at 262.821 kb on + strand at 262.821 kb on + strand at 262.821 kb on + strand at 262.822 kb on - strand at 262.822 kb on - strand at 262.822 kb on - strand at 262.822 kb on - strand at 262.822 kb on - strand at 262.822 kb on - strand at 262.822 kb on - strand at 262.822 kb on - strand at 262.822 kb on - strand at 262.822 kb on - strand at 262.828 kb on - strand at 262.835 kb on + strand at 262.844 kb on + strand at 262.844 kb on + strand at 262.844 kb on + strand at 262.845 kb on - strand at 262.845 kb on - strand at 262.845 kb on - strand at 262.845 kb on - strand at 262.845 kb on - strand at 262.935 kb on + strand, within AO353_01185 at 262.935 kb on + strand, within AO353_01185 at 262.935 kb on + strand, within AO353_01185 at 262.935 kb on + strand, within AO353_01185 at 262.935 kb on + strand, within AO353_01185 at 262.935 kb on + strand, within AO353_01185 at 262.935 kb on + strand, within AO353_01185 at 262.935 kb on + strand, within AO353_01185 at 262.936 kb on - strand, within AO353_01185 at 262.936 kb on - strand, within AO353_01185 at 262.944 kb on + strand, within AO353_01185 at 262.944 kb on + strand, within AO353_01185 at 262.944 kb on + strand, within AO353_01185 at 262.944 kb on + strand, within AO353_01185 at 262.944 kb on + strand, within AO353_01185 at 262.944 kb on + strand, within AO353_01185 at 262.944 kb on + strand, within AO353_01185 at 262.945 kb on - strand, within AO353_01185 at 262.945 kb on - strand, within AO353_01185 at 262.945 kb on - strand, within AO353_01185 at 262.945 kb on - strand, within AO353_01185 at 262.945 kb on - strand, within AO353_01185 at 263.070 kb on + strand, within AO353_01185 at 263.070 kb on + strand, within AO353_01185 at 263.070 kb on + strand, within AO353_01185 at 263.071 kb on - strand, within AO353_01185 at 263.154 kb on + strand at 263.155 kb on - strand at 263.194 kb on - strand at 263.274 kb on + strand at 263.274 kb on + strand at 263.274 kb on + strand at 263.275 kb on - strand at 263.275 kb on - strand at 263.275 kb on - strand at 263.295 kb on - strand at 263.327 kb on - strand at 263.380 kb on + strand at 263.589 kb on + strand, within AO353_01190 at 263.589 kb on + strand, within AO353_01190 at 263.589 kb on + strand, within AO353_01190 at 263.590 kb on - strand, within AO353_01190 at 263.630 kb on + strand at 263.631 kb on - strand at 263.631 kb on - strand at 263.631 kb on - strand at 263.649 kb on + strand at 263.649 kb on + strand at 263.649 kb on + strand at 263.649 kb on + strand at 263.649 kb on + strand at 263.650 kb on - strand at 263.650 kb on - strand at 263.650 kb on - strand at 263.650 kb on - strand at 263.650 kb on - strand at 263.706 kb on + strand at 263.707 kb on - strand at 263.707 kb on - strand at 263.754 kb on + strand at 263.754 kb on + strand at 263.754 kb on + strand at 263.754 kb on + strand at 263.754 kb on + strand at 263.754 kb on + strand at 263.754 kb on + strand at 263.754 kb on + strand at 263.755 kb on - strand at 263.755 kb on - strand at 263.755 kb on - strand at 263.755 kb on - strand at 263.755 kb on - strand at 263.755 kb on - strand at 263.755 kb on - strand at 263.788 kb on + strand at 263.788 kb on + strand at 263.788 kb on + strand at 263.789 kb on - strand at 263.789 kb on - strand at 263.789 kb on - strand at 263.840 kb on - strand, within AO353_01195 at 263.865 kb on + strand, within AO353_01195 at 263.866 kb on - strand, within AO353_01195 at 263.866 kb on - strand, within AO353_01195 at 263.866 kb on - strand, within AO353_01195 at 263.866 kb on - strand, within AO353_01195 at 263.958 kb on + strand, within AO353_01195 at 263.958 kb on + strand, within AO353_01195 at 263.958 kb on + strand at 263.959 kb on - strand, within AO353_01195 at 263.959 kb on - strand, within AO353_01195 at 263.959 kb on - strand, within AO353_01195 at 263.959 kb on - strand, within AO353_01195 at 263.959 kb on - strand, within AO353_01195 at 263.959 kb on - strand, within AO353_01195 at 263.980 kb on + strand, within AO353_01195 at 263.980 kb on + strand, within AO353_01195 at 263.981 kb on - strand, within AO353_01195 at 263.981 kb on - strand, within AO353_01195 at 264.013 kb on + strand, within AO353_01195 at 264.014 kb on - strand, within AO353_01195 at 264.014 kb on - strand, within AO353_01195 at 264.072 kb on + strand, within AO353_01195 at 264.072 kb on + strand, within AO353_01195 at 264.072 kb on + strand, within AO353_01195 at 264.073 kb on - strand, within AO353_01195 at 264.073 kb on - strand, within AO353_01195 at 264.073 kb on - strand, within AO353_01195 at 264.073 kb on - strand, within AO353_01195 at 264.210 kb on + strand, within AO353_01195 at 264.219 kb on + strand, within AO353_01195 at 264.220 kb on - strand, within AO353_01195 at 264.220 kb on - strand, within AO353_01195 at 264.220 kb on - strand, within AO353_01195 at 264.340 kb on + strand at 264.340 kb on + strand at 264.358 kb on + strand at 264.359 kb on - strand at 264.359 kb on - strand at 264.364 kb on + strand at 264.364 kb on + strand at 264.364 kb on + strand at 264.364 kb on + strand at 264.365 kb on - strand at 264.365 kb on - strand at 264.365 kb on - strand at 264.365 kb on - strand at 264.372 kb on - strand at 264.372 kb on - strand at 264.372 kb on - strand at 264.372 kb on - strand at 264.401 kb on + strand at 264.402 kb on - strand at 264.402 kb on - strand at 264.402 kb on - strand at 264.525 kb on + strand, within AO353_01200 at 264.526 kb on - strand, within AO353_01200
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.004 mg/ml remove 262,389 + -0.1 262,389 + -0.8 262,390 - +0.1 262,390 - -0.7 262,495 + +0.0 262,495 + -1.2 262,496 - +1.5 262,510 + -0.1 262,510 + -0.2 262,510 + +1.1 262,511 - +0.1 262,511 - -0.8 262,511 - +1.5 262,529 - +1.5 262,588 + +0.6 262,588 + -0.5 262,588 + +0.4 262,588 + +0.6 262,588 + -0.5 262,589 - +0.8 262,589 - -1.2 262,591 + +0.8 262,591 + +0.5 262,591 + +0.2 262,643 - -1.0 262,643 - +1.1 262,821 + +0.5 262,821 + +0.2 262,821 + +0.6 262,821 + -0.3 262,822 - -1.0 262,822 - +0.9 262,822 - +0.0 262,822 - -1.0 262,822 - -0.6 262,822 - +1.5 262,822 - -0.2 262,822 - -0.3 262,822 - +1.5 262,822 - -0.5 262,828 - +0.1 262,835 + -0.4 262,844 + -0.4 262,844 + +0.1 262,844 + -1.1 262,845 - +0.5 262,845 - -0.4 262,845 - +0.5 262,845 - -0.5 262,845 - +0.6 262,935 + AO353_01185 0.32 +0.5 262,935 + AO353_01185 0.32 -1.2 262,935 + AO353_01185 0.32 -0.6 262,935 + AO353_01185 0.32 -1.5 262,935 + AO353_01185 0.32 +0.1 262,935 + AO353_01185 0.32 -0.9 262,935 + AO353_01185 0.32 +0.1 262,935 + AO353_01185 0.32 -0.3 262,936 - AO353_01185 0.32 -0.1 262,936 - AO353_01185 0.32 -0.1 262,944 + AO353_01185 0.35 +0.1 262,944 + AO353_01185 0.35 -0.5 262,944 + AO353_01185 0.35 +0.1 262,944 + AO353_01185 0.35 -0.2 262,944 + AO353_01185 0.35 +0.5 262,944 + AO353_01185 0.35 -0.2 262,944 + AO353_01185 0.35 +0.5 262,945 - AO353_01185 0.35 +0.4 262,945 - AO353_01185 0.35 -0.1 262,945 - AO353_01185 0.35 +1.3 262,945 - AO353_01185 0.35 +1.0 262,945 - AO353_01185 0.35 +1.1 263,070 + AO353_01185 0.71 +0.8 263,070 + AO353_01185 0.71 +0.8 263,070 + AO353_01185 0.71 +0.1 263,071 - AO353_01185 0.72 -0.3 263,154 + -0.8 263,155 - +0.9 263,194 - -0.5 263,274 + -1.0 263,274 + -1.4 263,274 + -0.2 263,275 - -0.8 263,275 - +0.4 263,275 - -0.1 263,295 - +0.5 263,327 - -1.4 263,380 + -0.5 263,589 + AO353_01190 0.89 -0.5 263,589 + AO353_01190 0.89 +0.8 263,589 + AO353_01190 0.89 -2.0 263,590 - AO353_01190 0.89 -0.4 263,630 + -0.1 263,631 - -0.2 263,631 - +0.2 263,631 - +0.0 263,649 + +0.0 263,649 + -0.7 263,649 + +0.2 263,649 + -0.2 263,649 + +0.5 263,650 - +0.2 263,650 - +0.2 263,650 - +0.4 263,650 - +0.4 263,650 - +0.8 263,706 + +0.5 263,707 - -0.2 263,707 - +0.2 263,754 + -1.5 263,754 + +1.0 263,754 + +0.3 263,754 + +1.1 263,754 + -1.0 263,754 + +0.8 263,754 + +1.0 263,754 + -2.2 263,755 - -0.3 263,755 - +0.4 263,755 - -0.0 263,755 - -0.2 263,755 - +0.9 263,755 - -0.5 263,755 - +0.6 263,788 + +0.8 263,788 + -0.0 263,788 + -0.2 263,789 - +1.5 263,789 - -0.5 263,789 - -1.2 263,840 - AO353_01195 0.14 -0.5 263,865 + AO353_01195 0.18 +0.4 263,866 - AO353_01195 0.19 -0.5 263,866 - AO353_01195 0.19 -0.2 263,866 - AO353_01195 0.19 -0.5 263,866 - AO353_01195 0.19 +0.9 263,958 + AO353_01195 0.34 -1.3 263,958 + AO353_01195 0.34 -0.3 263,958 + +0.9 263,959 - AO353_01195 0.34 +0.5 263,959 - AO353_01195 0.34 +1.5 263,959 - AO353_01195 0.34 -0.0 263,959 - AO353_01195 0.34 -1.2 263,959 - AO353_01195 0.34 -0.2 263,959 - AO353_01195 0.34 +1.0 263,980 + AO353_01195 0.37 -0.6 263,980 + AO353_01195 0.37 -0.4 263,981 - AO353_01195 0.38 -1.8 263,981 - AO353_01195 0.38 +0.6 264,013 + AO353_01195 0.43 +1.9 264,014 - AO353_01195 0.43 +0.6 264,014 - AO353_01195 0.43 -0.5 264,072 + AO353_01195 0.53 +0.2 264,072 + AO353_01195 0.53 +0.8 264,072 + AO353_01195 0.53 -0.7 264,073 - AO353_01195 0.53 +1.1 264,073 - AO353_01195 0.53 +1.3 264,073 - AO353_01195 0.53 +0.3 264,073 - AO353_01195 0.53 -1.1 264,210 + AO353_01195 0.75 -1.0 264,219 + AO353_01195 0.77 +1.1 264,220 - AO353_01195 0.77 +1.2 264,220 - AO353_01195 0.77 -0.0 264,220 - AO353_01195 0.77 -0.1 264,340 + +0.7 264,340 + -1.1 264,358 + -0.4 264,359 - +0.0 264,359 - +0.8 264,364 + +1.1 264,364 + -0.1 264,364 + -0.4 264,364 + +0.1 264,365 - +0.0 264,365 - +1.5 264,365 - +1.1 264,365 - -1.1 264,372 - -0.2 264,372 - +1.2 264,372 - -0.1 264,372 - +0.2 264,401 + +0.7 264,402 - -0.2 264,402 - +0.0 264,402 - -0.7 264,525 + AO353_01200 0.49 -1.1 264,526 - AO353_01200 0.49 -0.1
Or see this region's nucleotide sequence