Experiment: Chloramphenicol 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00640 and AO353_00645 are separated by 22 nucleotides AO353_00645 and AO353_00650 overlap by 8 nucleotides AO353_00650 and AO353_00655 are separated by 257 nucleotides
AO353_00640: AO353_00640 - carbonate dehydratase, at 135,059 to 137,509
_00640
AO353_00645: AO353_00645 - cytochrome C oxidase Cbb3, at 137,532 to 137,762
_00645
AO353_00650: AO353_00650 - cytochrome biogenesis protein, at 137,755 to 138,438
_00650
AO353_00655: AO353_00655 - coproporphyrinogen III oxidase, at 138,696 to 140,078
_00655
Position (kb)
137
138
139 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 137.293 kb on + strand at 137.293 kb on + strand at 137.337 kb on - strand at 137.589 kb on + strand, within AO353_00645 at 137.908 kb on + strand, within AO353_00650 at 138.110 kb on + strand, within AO353_00650 at 138.110 kb on + strand, within AO353_00650 at 138.110 kb on + strand, within AO353_00650 at 138.110 kb on + strand, within AO353_00650 at 138.111 kb on - strand, within AO353_00650 at 138.111 kb on - strand, within AO353_00650 at 138.349 kb on - strand, within AO353_00650 at 138.436 kb on + strand at 138.436 kb on + strand at 138.436 kb on + strand at 138.436 kb on + strand at 138.437 kb on - strand at 138.437 kb on - strand at 138.437 kb on - strand at 138.437 kb on - strand at 138.456 kb on + strand at 138.456 kb on + strand at 138.456 kb on + strand at 138.457 kb on - strand at 138.457 kb on - strand at 138.462 kb on + strand at 138.462 kb on + strand at 138.462 kb on + strand at 138.463 kb on - strand at 138.503 kb on - strand at 138.544 kb on + strand at 138.545 kb on - strand at 138.545 kb on - strand at 138.557 kb on + strand at 138.557 kb on + strand at 138.557 kb on + strand at 138.557 kb on + strand at 138.557 kb on + strand at 138.557 kb on + strand at 138.558 kb on - strand at 138.558 kb on - strand at 138.558 kb on - strand at 138.558 kb on - strand at 138.558 kb on - strand at 138.558 kb on - strand at 138.558 kb on - strand at 138.558 kb on - strand at 138.558 kb on - strand at 138.558 kb on - strand at 138.558 kb on - strand at 138.588 kb on + strand at 138.588 kb on + strand at 138.589 kb on - strand at 138.589 kb on - strand at 138.589 kb on - strand at 138.759 kb on + strand at 138.760 kb on - strand at 138.804 kb on - strand at 138.864 kb on + strand, within AO353_00655 at 138.864 kb on + strand, within AO353_00655 at 138.864 kb on + strand, within AO353_00655 at 138.864 kb on + strand, within AO353_00655 at 138.864 kb on + strand, within AO353_00655 at 138.864 kb on + strand at 138.865 kb on - strand, within AO353_00655 at 138.865 kb on - strand, within AO353_00655 at 138.865 kb on - strand, within AO353_00655 at 138.897 kb on + strand, within AO353_00655 at 138.897 kb on + strand, within AO353_00655 at 138.898 kb on - strand, within AO353_00655 at 138.898 kb on - strand, within AO353_00655 at 138.900 kb on + strand, within AO353_00655 at 138.900 kb on + strand, within AO353_00655 at 138.900 kb on + strand, within AO353_00655 at 138.901 kb on - strand, within AO353_00655 at 138.901 kb on - strand, within AO353_00655 at 138.901 kb on - strand, within AO353_00655 at 138.952 kb on - strand, within AO353_00655 at 139.241 kb on - strand, within AO353_00655 at 139.341 kb on + strand, within AO353_00655 at 139.341 kb on + strand, within AO353_00655 at 139.342 kb on - strand, within AO353_00655 at 139.342 kb on - strand, within AO353_00655 at 139.342 kb on - strand, within AO353_00655 at 139.342 kb on - strand, within AO353_00655 at 139.431 kb on + strand, within AO353_00655 at 139.431 kb on + strand, within AO353_00655 at 139.431 kb on + strand, within AO353_00655 at 139.431 kb on + strand, within AO353_00655 at 139.431 kb on + strand, within AO353_00655 at 139.431 kb on + strand, within AO353_00655 at 139.431 kb on + strand, within AO353_00655 at 139.431 kb on + strand, within AO353_00655 at 139.431 kb on + strand, within AO353_00655 at 139.431 kb on + strand, within AO353_00655 at 139.431 kb on + strand, within AO353_00655 at 139.431 kb on + strand, within AO353_00655 at 139.432 kb on - strand, within AO353_00655 at 139.432 kb on - strand, within AO353_00655 at 139.432 kb on - strand, within AO353_00655 at 139.432 kb on - strand, within AO353_00655 at 139.432 kb on - strand, within AO353_00655 at 139.432 kb on - strand, within AO353_00655 at 139.432 kb on - strand, within AO353_00655 at 139.432 kb on - strand, within AO353_00655 at 139.432 kb on - strand, within AO353_00655 at 139.432 kb on - strand, within AO353_00655 at 139.432 kb on - strand, within AO353_00655 at 139.432 kb on - strand, within AO353_00655 at 139.432 kb on - strand, within AO353_00655
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.004 mg/ml remove 137,293 + -2.3 137,293 + -0.5 137,337 - -0.5 137,589 + AO353_00645 0.25 -0.2 137,908 + AO353_00650 0.22 -0.7 138,110 + AO353_00650 0.52 +0.9 138,110 + AO353_00650 0.52 -1.1 138,110 + AO353_00650 0.52 -0.3 138,110 + AO353_00650 0.52 +0.5 138,111 - AO353_00650 0.52 -1.9 138,111 - AO353_00650 0.52 -1.5 138,349 - AO353_00650 0.87 -0.5 138,436 + +0.1 138,436 + -0.2 138,436 + +0.3 138,436 + -0.9 138,437 - +0.6 138,437 - -0.6 138,437 - +0.7 138,437 - +0.5 138,456 + +0.1 138,456 + +2.1 138,456 + -0.4 138,457 - +0.1 138,457 - -0.0 138,462 + -1.3 138,462 + +1.1 138,462 + -0.6 138,463 - +0.9 138,503 - -0.3 138,544 + -0.9 138,545 - -1.3 138,545 - +0.6 138,557 + -0.5 138,557 + -0.1 138,557 + +1.0 138,557 + +0.2 138,557 + +2.1 138,557 + -0.1 138,558 - +0.6 138,558 - -0.7 138,558 - -0.4 138,558 - +0.4 138,558 - -0.3 138,558 - -0.9 138,558 - -0.8 138,558 - -0.2 138,558 - +0.5 138,558 - +0.4 138,558 - -0.2 138,588 + +0.3 138,588 + +0.6 138,589 - -0.9 138,589 - -1.9 138,589 - +0.3 138,759 + +0.1 138,760 - +0.1 138,804 - +1.0 138,864 + AO353_00655 0.12 -0.6 138,864 + AO353_00655 0.12 +0.0 138,864 + AO353_00655 0.12 -0.1 138,864 + AO353_00655 0.12 -1.2 138,864 + AO353_00655 0.12 +1.8 138,864 + -0.1 138,865 - AO353_00655 0.12 -1.5 138,865 - AO353_00655 0.12 +0.5 138,865 - AO353_00655 0.12 +0.8 138,897 + AO353_00655 0.15 +1.6 138,897 + AO353_00655 0.15 +0.3 138,898 - AO353_00655 0.15 +0.2 138,898 - AO353_00655 0.15 -0.1 138,900 + AO353_00655 0.15 -0.3 138,900 + AO353_00655 0.15 +0.1 138,900 + AO353_00655 0.15 +0.6 138,901 - AO353_00655 0.15 +0.1 138,901 - AO353_00655 0.15 +0.0 138,901 - AO353_00655 0.15 +0.7 138,952 - AO353_00655 0.19 +0.8 139,241 - AO353_00655 0.39 -1.7 139,341 + AO353_00655 0.47 -0.7 139,341 + AO353_00655 0.47 -0.4 139,342 - AO353_00655 0.47 +0.5 139,342 - AO353_00655 0.47 +0.5 139,342 - AO353_00655 0.47 -0.5 139,342 - AO353_00655 0.47 +0.8 139,431 + AO353_00655 0.53 -0.3 139,431 + AO353_00655 0.53 +1.0 139,431 + AO353_00655 0.53 -0.9 139,431 + AO353_00655 0.53 +0.2 139,431 + AO353_00655 0.53 -0.5 139,431 + AO353_00655 0.53 -0.5 139,431 + AO353_00655 0.53 -1.9 139,431 + AO353_00655 0.53 -1.3 139,431 + AO353_00655 0.53 +1.1 139,431 + AO353_00655 0.53 +1.1 139,431 + AO353_00655 0.53 -0.1 139,431 + AO353_00655 0.53 -1.1 139,432 - AO353_00655 0.53 -1.2 139,432 - AO353_00655 0.53 -0.4 139,432 - AO353_00655 0.53 +0.1 139,432 - AO353_00655 0.53 +1.2 139,432 - AO353_00655 0.53 -0.1 139,432 - AO353_00655 0.53 +1.5 139,432 - AO353_00655 0.53 +1.5 139,432 - AO353_00655 0.53 -1.8 139,432 - AO353_00655 0.53 -0.1 139,432 - AO353_00655 0.53 -0.5 139,432 - AO353_00655 0.53 +0.2 139,432 - AO353_00655 0.53 +0.5 139,432 - AO353_00655 0.53 +0.5
Or see this region's nucleotide sequence