Experiment: Chloramphenicol 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00320 and AO353_00325 are separated by 276 nucleotides AO353_00325 and AO353_00330 are separated by 63 nucleotides AO353_00330 and AO353_00335 are separated by 188 nucleotides AO353_00335 and AO353_00340 are separated by 123 nucleotides
AO353_00320: AO353_00320 - chemotaxis protein CheY, at 58,643 to 59,824
_00320
AO353_00325: AO353_00325 - pilus assembly protein, at 60,101 to 60,400
_00325
AO353_00330: AO353_00330 - hypothetical protein, at 60,464 to 61,153
_00330
AO353_00335: AO353_00335 - phosphatase, at 61,342 to 61,962
_00335
AO353_00340: AO353_00340 - chromosome partitioning protein ParA, at 62,086 to 62,349
_00340
Position (kb) 60
61
62 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 59.847 kb on - strand at 59.857 kb on - strand at 59.904 kb on - strand at 59.940 kb on - strand at 59.969 kb on - strand at 59.969 kb on - strand at 60.035 kb on + strand at 60.035 kb on + strand at 60.035 kb on + strand at 60.035 kb on + strand at 60.035 kb on + strand at 60.035 kb on + strand at 60.035 kb on + strand at 60.035 kb on + strand at 60.035 kb on + strand at 60.036 kb on - strand at 60.036 kb on - strand at 60.036 kb on - strand at 60.057 kb on + strand at 60.058 kb on - strand at 60.058 kb on - strand at 60.059 kb on + strand at 60.059 kb on + strand at 60.059 kb on + strand at 60.059 kb on + strand at 60.060 kb on - strand at 60.060 kb on - strand at 60.060 kb on - strand at 60.060 kb on - strand at 60.122 kb on + strand at 60.122 kb on + strand at 60.123 kb on - strand at 60.140 kb on + strand, within AO353_00325 at 60.140 kb on + strand, within AO353_00325 at 60.140 kb on + strand, within AO353_00325 at 60.140 kb on + strand, within AO353_00325 at 60.141 kb on - strand, within AO353_00325 at 60.279 kb on + strand, within AO353_00325 at 60.279 kb on + strand, within AO353_00325 at 60.279 kb on + strand, within AO353_00325 at 60.279 kb on + strand, within AO353_00325 at 60.279 kb on + strand, within AO353_00325 at 60.280 kb on - strand, within AO353_00325 at 60.280 kb on - strand, within AO353_00325 at 60.280 kb on - strand, within AO353_00325 at 60.379 kb on + strand at 60.379 kb on + strand at 60.379 kb on + strand at 60.379 kb on + strand at 60.379 kb on + strand at 60.379 kb on + strand at 60.379 kb on + strand at 60.380 kb on - strand at 60.380 kb on - strand at 60.380 kb on - strand at 60.380 kb on - strand at 60.380 kb on - strand at 60.465 kb on + strand at 60.519 kb on + strand at 60.520 kb on - strand at 60.520 kb on - strand at 60.520 kb on - strand at 60.540 kb on + strand, within AO353_00330 at 60.540 kb on + strand, within AO353_00330 at 60.540 kb on + strand, within AO353_00330 at 60.540 kb on + strand, within AO353_00330 at 60.540 kb on + strand, within AO353_00330 at 60.541 kb on - strand, within AO353_00330 at 60.541 kb on - strand, within AO353_00330 at 60.541 kb on - strand, within AO353_00330 at 60.541 kb on - strand, within AO353_00330 at 60.541 kb on - strand, within AO353_00330 at 60.616 kb on + strand, within AO353_00330 at 60.616 kb on + strand, within AO353_00330 at 60.617 kb on - strand, within AO353_00330 at 60.617 kb on - strand, within AO353_00330 at 60.661 kb on - strand, within AO353_00330 at 60.661 kb on - strand, within AO353_00330 at 60.664 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.674 kb on + strand, within AO353_00330 at 60.674 kb on + strand, within AO353_00330 at 60.675 kb on - strand, within AO353_00330 at 60.726 kb on + strand, within AO353_00330 at 60.726 kb on + strand, within AO353_00330 at 60.727 kb on - strand, within AO353_00330 at 60.970 kb on + strand, within AO353_00330 at 60.970 kb on + strand, within AO353_00330 at 61.008 kb on + strand, within AO353_00330 at 61.008 kb on + strand, within AO353_00330 at 61.008 kb on + strand, within AO353_00330 at 61.008 kb on + strand, within AO353_00330 at 61.009 kb on - strand, within AO353_00330 at 61.019 kb on + strand, within AO353_00330 at 61.020 kb on - strand, within AO353_00330 at 61.020 kb on - strand, within AO353_00330 at 61.020 kb on - strand, within AO353_00330 at 61.035 kb on + strand, within AO353_00330 at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.133 kb on + strand at 61.134 kb on - strand at 61.214 kb on - strand at 61.214 kb on - strand at 61.216 kb on + strand at 61.216 kb on + strand at 61.216 kb on + strand at 61.216 kb on + strand at 61.216 kb on + strand at 61.217 kb on - strand at 61.217 kb on - strand at 61.217 kb on - strand at 61.217 kb on - strand at 61.217 kb on - strand at 61.217 kb on - strand at 61.218 kb on + strand at 61.218 kb on + strand at 61.218 kb on + strand at 61.218 kb on + strand at 61.218 kb on + strand at 61.218 kb on + strand at 61.219 kb on - strand at 61.219 kb on - strand at 61.219 kb on - strand at 61.219 kb on - strand at 61.219 kb on - strand at 61.219 kb on - strand at 61.228 kb on - strand at 61.228 kb on - strand at 61.228 kb on - strand at 61.228 kb on - strand at 61.232 kb on - strand at 61.232 kb on - strand at 61.232 kb on - strand at 61.232 kb on - strand at 61.237 kb on + strand at 61.237 kb on + strand at 61.325 kb on - strand at 61.325 kb on - strand at 61.325 kb on - strand at 61.337 kb on + strand at 61.337 kb on + strand at 61.337 kb on + strand at 61.337 kb on + strand at 61.337 kb on + strand at 61.338 kb on - strand at 61.338 kb on - strand at 62.009 kb on - strand at 62.013 kb on + strand at 62.052 kb on + strand at 62.052 kb on + strand at 62.053 kb on - strand at 62.053 kb on - strand at 62.053 kb on - strand at 62.053 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.004 mg/ml remove 59,847 - -0.3 59,857 - +0.9 59,904 - +0.7 59,940 - +0.1 59,969 - +0.9 59,969 - +0.6 60,035 + +0.7 60,035 + +0.5 60,035 + +0.5 60,035 + +0.1 60,035 + -1.1 60,035 + -0.5 60,035 + +1.5 60,035 + +0.2 60,035 + +1.5 60,036 - +0.0 60,036 - +0.8 60,036 - -1.3 60,057 + -0.6 60,058 - -0.2 60,058 - -0.3 60,059 + -0.3 60,059 + -0.7 60,059 + +0.9 60,059 + -0.2 60,060 - +1.1 60,060 - -0.1 60,060 - +0.5 60,060 - +0.9 60,122 + -0.7 60,122 + -1.1 60,123 - +0.8 60,140 + AO353_00325 0.13 -0.1 60,140 + AO353_00325 0.13 +0.9 60,140 + AO353_00325 0.13 +0.1 60,140 + AO353_00325 0.13 +0.5 60,141 - AO353_00325 0.13 +1.7 60,279 + AO353_00325 0.59 -1.1 60,279 + AO353_00325 0.59 +0.5 60,279 + AO353_00325 0.59 -1.6 60,279 + AO353_00325 0.59 +0.1 60,279 + AO353_00325 0.59 -0.2 60,280 - AO353_00325 0.60 -1.5 60,280 - AO353_00325 0.60 -1.5 60,280 - AO353_00325 0.60 +0.3 60,379 + -0.3 60,379 + -2.1 60,379 + +0.1 60,379 + +0.2 60,379 + -0.5 60,379 + +0.4 60,379 + +0.5 60,380 - -0.3 60,380 - +1.0 60,380 - +0.1 60,380 - -0.5 60,380 - +1.1 60,465 + +0.6 60,519 + +0.9 60,520 - -2.1 60,520 - -1.4 60,520 - -1.5 60,540 + AO353_00330 0.11 -1.7 60,540 + AO353_00330 0.11 -1.1 60,540 + AO353_00330 0.11 -0.1 60,540 + AO353_00330 0.11 -0.3 60,540 + AO353_00330 0.11 -1.9 60,541 - AO353_00330 0.11 -0.5 60,541 - AO353_00330 0.11 -2.0 60,541 - AO353_00330 0.11 -2.3 60,541 - AO353_00330 0.11 +0.9 60,541 - AO353_00330 0.11 -2.1 60,616 + AO353_00330 0.22 +0.9 60,616 + AO353_00330 0.22 -1.7 60,617 - AO353_00330 0.22 -0.3 60,617 - AO353_00330 0.22 -1.7 60,661 - AO353_00330 0.29 -0.3 60,661 - AO353_00330 0.29 -2.0 60,664 + AO353_00330 0.29 -1.3 60,672 + AO353_00330 0.30 +0.5 60,672 + AO353_00330 0.30 -0.9 60,672 + AO353_00330 0.30 -1.1 60,672 + AO353_00330 0.30 -1.3 60,672 + AO353_00330 0.30 -2.5 60,672 + AO353_00330 0.30 -2.9 60,672 + AO353_00330 0.30 -2.1 60,672 + AO353_00330 0.30 -0.7 60,672 + AO353_00330 0.30 -0.3 60,672 + AO353_00330 0.30 -0.5 60,672 + AO353_00330 0.30 -1.5 60,673 - AO353_00330 0.30 -1.5 60,673 - AO353_00330 0.30 -0.1 60,673 - AO353_00330 0.30 -0.1 60,673 - AO353_00330 0.30 +0.5 60,673 - AO353_00330 0.30 -0.1 60,673 - AO353_00330 0.30 -0.9 60,673 - AO353_00330 0.30 -0.5 60,673 - AO353_00330 0.30 -0.3 60,673 - AO353_00330 0.30 -0.3 60,673 - AO353_00330 0.30 -0.5 60,673 - AO353_00330 0.30 -0.3 60,673 - AO353_00330 0.30 -1.7 60,673 - AO353_00330 0.30 +0.7 60,673 - AO353_00330 0.30 -2.6 60,673 - AO353_00330 0.30 -0.9 60,673 - AO353_00330 0.30 -2.1 60,674 + AO353_00330 0.30 -1.0 60,674 + AO353_00330 0.30 -1.3 60,675 - AO353_00330 0.31 -1.7 60,726 + AO353_00330 0.38 +2.1 60,726 + AO353_00330 0.38 -2.2 60,727 - AO353_00330 0.38 +0.1 60,970 + AO353_00330 0.73 -1.1 60,970 + AO353_00330 0.73 -0.9 61,008 + AO353_00330 0.79 -1.5 61,008 + AO353_00330 0.79 -1.7 61,008 + AO353_00330 0.79 -1.1 61,008 + AO353_00330 0.79 -0.5 61,009 - AO353_00330 0.79 -0.5 61,019 + AO353_00330 0.80 -1.0 61,020 - AO353_00330 0.81 -0.5 61,020 - AO353_00330 0.81 -2.3 61,020 - AO353_00330 0.81 -1.9 61,035 + AO353_00330 0.83 -0.9 61,120 + -2.3 61,120 + -2.9 61,120 + -2.1 61,120 + -1.5 61,120 + +0.5 61,120 + -1.5 61,120 + -0.9 61,120 + -1.0 61,120 + -2.4 61,120 + -2.0 61,120 + -0.3 61,120 + -2.0 61,120 + -1.5 61,120 + -0.5 61,120 + +0.5 61,120 + -1.1 61,120 + -2.5 61,120 + -2.3 61,120 + -2.8 61,121 - -1.5 61,121 - -1.1 61,121 - -1.1 61,121 - -1.5 61,121 - -1.3 61,121 - -0.7 61,121 - -1.5 61,121 - -1.1 61,121 - -0.3 61,121 - -1.1 61,121 - -1.7 61,121 - -0.1 61,121 - -1.1 61,121 - -1.7 61,124 + -0.1 61,124 + -2.0 61,124 + -1.9 61,124 + -1.3 61,124 + -0.4 61,124 + -0.7 61,124 + -2.3 61,124 + +0.2 61,124 + -2.8 61,124 + +0.5 61,125 - +0.3 61,125 - -0.5 61,125 - -0.9 61,125 - -2.1 61,125 - -1.6 61,125 - -3.2 61,125 - -2.5 61,125 - -0.1 61,125 - -0.3 61,133 + -3.3 61,134 - -0.9 61,214 - +0.1 61,214 - -0.9 61,216 + -1.0 61,216 + -1.7 61,216 + -1.1 61,216 + -1.6 61,216 + -2.7 61,217 - +1.1 61,217 - +0.4 61,217 - +0.0 61,217 - -0.9 61,217 - -0.1 61,217 - +0.5 61,218 + -0.6 61,218 + +0.1 61,218 + -0.5 61,218 + -1.2 61,218 + -0.9 61,218 + -2.6 61,219 - +0.1 61,219 - +0.0 61,219 - -0.5 61,219 - +1.5 61,219 - +0.1 61,219 - +1.1 61,228 - -1.5 61,228 - +0.1 61,228 - +0.1 61,228 - +0.2 61,232 - -1.0 61,232 - -1.3 61,232 - -0.6 61,232 - +0.7 61,237 + +0.7 61,237 + -0.5 61,325 - +0.5 61,325 - -1.3 61,325 - -0.9 61,337 + +0.6 61,337 + -0.6 61,337 + -0.4 61,337 + +2.1 61,337 + -0.5 61,338 - +2.8 61,338 - +0.2 62,009 - -0.1 62,013 + -0.7 62,052 + +0.5 62,052 + +0.5 62,053 - +0.6 62,053 - +1.1 62,053 - +1.1 62,053 - +0.3
Or see this region's nucleotide sequence