Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3203 and DvMF_3204 are separated by 241 nucleotides DvMF_3204 and ruvB overlap by 1 nucleotides ruvB and thyX are separated by 222 nucleotides
DvMF_3203: DvMF_3203 - diguanylate cyclase (RefSeq), at 4,035,220 to 4,036,929
_3203
DvMF_3204: DvMF_3204 - Holliday junction DNA helicase RuvA (RefSeq), at 4,037,171 to 4,037,779
_3204
DvMF_3205: ruvB - Holliday junction DNA helicase RuvB (RefSeq), at 4,037,779 to 4,038,783
ruvB
DvMF_3206: thyX - FAD-dependent thymidylate synthase (RefSeq), at 4,039,006 to 4,039,737
thyX
Position (kb)
4037
4038
4039 Strain fitness (log2 ratio)
-2
-1
0
1 at 4036.809 kb on - strand at 4036.834 kb on - strand at 4036.860 kb on + strand at 4037.002 kb on + strand at 4037.047 kb on - strand at 4037.083 kb on + strand at 4037.098 kb on + strand at 4037.343 kb on + strand, within DvMF_3204 at 4037.351 kb on - strand, within DvMF_3204 at 4037.385 kb on + strand, within DvMF_3204 at 4037.388 kb on + strand, within DvMF_3204 at 4037.401 kb on - strand, within DvMF_3204 at 4037.729 kb on - strand at 4037.790 kb on + strand at 4037.811 kb on + strand at 4037.872 kb on - strand at 4038.272 kb on + strand, within ruvB at 4038.638 kb on - strand, within ruvB
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 4,036,809 - -0.4 4,036,834 - -0.7 4,036,860 + -0.9 4,037,002 + -0.2 4,037,047 - -0.1 4,037,083 + -0.2 4,037,098 + -0.4 4,037,343 + DvMF_3204 0.28 -0.7 4,037,351 - DvMF_3204 0.30 -1.8 4,037,385 + DvMF_3204 0.35 -1.1 4,037,388 + DvMF_3204 0.36 -2.4 4,037,401 - DvMF_3204 0.38 -1.3 4,037,729 - -1.3 4,037,790 + +1.4 4,037,811 + -1.3 4,037,872 - -0.5 4,038,272 + ruvB DvMF_3205 0.49 -1.2 4,038,638 - ruvB DvMF_3205 0.85 -0.9
Or see this region's nucleotide sequence