Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2888 and DvMF_2889 are separated by 356 nucleotides DvMF_2889 and DvMF_2890 are separated by 117 nucleotides DvMF_2890 and DvMF_2891 overlap by 11 nucleotides
DvMF_2888: DvMF_2888 - signal recognition particle protein (RefSeq), at 3,643,457 to 3,645,013
_2888
DvMF_2889: DvMF_2889 - aspartate aminotransferase (RefSeq), at 3,645,370 to 3,646,554
_2889
DvMF_2890: DvMF_2890 - hypothetical protein (RefSeq), at 3,646,672 to 3,646,905
_2890
DvMF_2891: DvMF_2891 - 5-enolpyruvylshikimate-3-phosphate synthase-like protein (RefSeq), at 3,646,895 to 3,648,772
_2891
Position (kb)
3645
3646
3647 Strain fitness (log2 ratio)
-2
-1
0
1 at 3645.149 kb on + strand at 3645.187 kb on + strand at 3645.195 kb on - strand at 3645.196 kb on - strand at 3645.617 kb on - strand, within DvMF_2889 at 3645.779 kb on + strand, within DvMF_2889 at 3645.829 kb on + strand, within DvMF_2889 at 3646.171 kb on + strand, within DvMF_2889 at 3646.235 kb on + strand, within DvMF_2889 at 3646.283 kb on + strand, within DvMF_2889 at 3646.283 kb on + strand, within DvMF_2889 at 3646.465 kb on - strand at 3646.979 kb on + strand at 3647.063 kb on - strand at 3647.106 kb on - strand, within DvMF_2891 at 3647.242 kb on - strand, within DvMF_2891 at 3647.442 kb on - strand, within DvMF_2891 at 3647.545 kb on + strand, within DvMF_2891
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 3,645,149 + -0.1 3,645,187 + -0.3 3,645,195 - +0.2 3,645,196 - -0.2 3,645,617 - DvMF_2889 0.21 -0.5 3,645,779 + DvMF_2889 0.35 -1.1 3,645,829 + DvMF_2889 0.39 -0.7 3,646,171 + DvMF_2889 0.68 -1.8 3,646,235 + DvMF_2889 0.73 -0.5 3,646,283 + DvMF_2889 0.77 -0.6 3,646,283 + DvMF_2889 0.77 -1.3 3,646,465 - -0.3 3,646,979 + -0.3 3,647,063 - -0.7 3,647,106 - DvMF_2891 0.11 -0.6 3,647,242 - DvMF_2891 0.18 +0.3 3,647,442 - DvMF_2891 0.29 -0.5 3,647,545 + DvMF_2891 0.35 -0.1
Or see this region's nucleotide sequence