Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2401 and DvMF_2402 are separated by 418 nucleotides DvMF_2402 and DvMF_2403 are separated by 598 nucleotides DvMF_2403 and DvMF_2404 are separated by 131 nucleotides
DvMF_2401: DvMF_2401 - nickel transporter permease NikB (RefSeq), at 3,034,090 to 3,035,031
_2401
DvMF_2402: DvMF_2402 - nickel ABC transporter, periplasmic nickel-binding protein (RefSeq), at 3,035,450 to 3,037,066
_2402
DvMF_2403: DvMF_2403 - TOBE domain protein (RefSeq), at 3,037,665 to 3,037,874
_2403
DvMF_2404: DvMF_2404 - protein of unknown function DUF1105 (RefSeq), at 3,038,006 to 3,038,593
_2404
Position (kb)
3035
3036
3037
3038 Strain fitness (log2 ratio)
-2
-1
0
1 at 3034.495 kb on + strand, within DvMF_2401 at 3035.151 kb on + strand at 3035.151 kb on + strand at 3035.603 kb on - strand at 3035.743 kb on - strand, within DvMF_2402 at 3035.899 kb on + strand, within DvMF_2402 at 3035.924 kb on - strand, within DvMF_2402 at 3036.128 kb on + strand, within DvMF_2402 at 3036.145 kb on + strand, within DvMF_2402 at 3036.279 kb on - strand, within DvMF_2402 at 3036.374 kb on - strand, within DvMF_2402 at 3036.388 kb on + strand, within DvMF_2402 at 3036.610 kb on + strand, within DvMF_2402 at 3037.012 kb on + strand at 3037.475 kb on + strand at 3037.564 kb on - strand at 3037.671 kb on - strand at 3037.686 kb on - strand, within DvMF_2403 at 3037.770 kb on + strand, within DvMF_2403 at 3037.802 kb on - strand, within DvMF_2403 at 3038.028 kb on - strand at 3038.028 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 3,034,495 + DvMF_2401 0.43 -1.2 3,035,151 + -0.0 3,035,151 + -0.1 3,035,603 - -0.8 3,035,743 - DvMF_2402 0.18 -0.7 3,035,899 + DvMF_2402 0.28 -0.6 3,035,924 - DvMF_2402 0.29 -2.2 3,036,128 + DvMF_2402 0.42 -2.3 3,036,145 + DvMF_2402 0.43 -0.6 3,036,279 - DvMF_2402 0.51 -0.8 3,036,374 - DvMF_2402 0.57 -1.2 3,036,388 + DvMF_2402 0.58 -2.1 3,036,610 + DvMF_2402 0.72 -0.7 3,037,012 + -0.4 3,037,475 + -0.4 3,037,564 - -0.3 3,037,671 - -0.2 3,037,686 - DvMF_2403 0.10 -0.5 3,037,770 + DvMF_2403 0.50 -0.3 3,037,802 - DvMF_2403 0.65 +0.0 3,038,028 - -0.2 3,038,028 - -0.1
Or see this region's nucleotide sequence