Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1985

Experiment: rich MoYLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1984 and DvMF_1985 are separated by 1 nucleotidesDvMF_1985 and DvMF_1986 are separated by 377 nucleotides DvMF_1984: DvMF_1984 - protein of unknown function DUF81 (RefSeq), at 2,455,824 to 2,457,071 _1984 DvMF_1985: DvMF_1985 - hypothetical protein (RefSeq), at 2,457,073 to 2,457,792 _1985 DvMF_1986: DvMF_1986 - Superoxide dismutase (RefSeq), at 2,458,170 to 2,458,886 _1986 Position (kb) 2457 2458Strain fitness (log2 ratio) -1 0 1at 2456.103 kb on + strand, within DvMF_1984at 2456.163 kb on - strand, within DvMF_1984at 2456.180 kb on - strand, within DvMF_1984at 2456.397 kb on - strand, within DvMF_1984at 2456.399 kb on + strand, within DvMF_1984at 2456.756 kb on + strand, within DvMF_1984at 2456.768 kb on + strand, within DvMF_1984at 2456.839 kb on - strand, within DvMF_1984at 2456.914 kb on - strand, within DvMF_1984at 2457.228 kb on + strand, within DvMF_1985at 2457.267 kb on - strand, within DvMF_1985at 2457.303 kb on + strand, within DvMF_1985at 2457.319 kb on - strand, within DvMF_1985at 2457.399 kb on - strand, within DvMF_1985at 2457.445 kb on + strand, within DvMF_1985at 2457.495 kb on - strand, within DvMF_1985at 2457.738 kb on + strandat 2457.738 kb on + strandat 2457.746 kb on + strandat 2457.830 kb on + strandat 2457.863 kb on + strandat 2458.011 kb on + strandat 2458.257 kb on + strand, within DvMF_1986at 2458.498 kb on - strand, within DvMF_1986at 2458.516 kb on - strand, within DvMF_1986at 2458.529 kb on - strand, within DvMF_1986at 2458.530 kb on - strand, within DvMF_1986at 2458.746 kb on + strand, within DvMF_1986

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
remove
2,456,103 + DvMF_1984 0.22 -0.7
2,456,163 - DvMF_1984 0.27 -0.6
2,456,180 - DvMF_1984 0.29 -0.4
2,456,397 - DvMF_1984 0.46 -0.1
2,456,399 + DvMF_1984 0.46 -1.5
2,456,756 + DvMF_1984 0.75 -0.6
2,456,768 + DvMF_1984 0.76 -0.6
2,456,839 - DvMF_1984 0.81 -0.7
2,456,914 - DvMF_1984 0.87 -0.5
2,457,228 + DvMF_1985 0.22 -0.8
2,457,267 - DvMF_1985 0.27 -0.6
2,457,303 + DvMF_1985 0.32 -1.2
2,457,319 - DvMF_1985 0.34 -1.4
2,457,399 - DvMF_1985 0.45 -0.3
2,457,445 + DvMF_1985 0.52 -0.9
2,457,495 - DvMF_1985 0.59 -0.7
2,457,738 + -0.1
2,457,738 + -0.7
2,457,746 + +0.2
2,457,830 + -0.9
2,457,863 + -0.8
2,458,011 + -0.4
2,458,257 + DvMF_1986 0.12 -0.3
2,458,498 - DvMF_1986 0.46 -0.3
2,458,516 - DvMF_1986 0.48 -0.3
2,458,529 - DvMF_1986 0.50 -0.1
2,458,530 - DvMF_1986 0.50 +0.8
2,458,746 + DvMF_1986 0.80 -0.9

Or see this region's nucleotide sequence