Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1955

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1953 and DvMF_1954 are separated by 95 nucleotidesDvMF_1954 and DvMF_1955 are separated by 18 nucleotidesDvMF_1955 and DvMF_1956 are separated by 78 nucleotides DvMF_1953: DvMF_1953 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 2,414,670 to 2,415,680 _1953 DvMF_1954: DvMF_1954 - hypothetical protein (RefSeq), at 2,415,776 to 2,416,114 _1954 DvMF_1955: DvMF_1955 - thiamineS protein (RefSeq), at 2,416,133 to 2,416,360 _1955 DvMF_1956: DvMF_1956 - Aldehyde ferredoxin oxidoreductase (RefSeq), at 2,416,439 to 2,418,166 _1956 Position (kb) 2416 2417Strain fitness (log2 ratio) -1 0 1at 2415.329 kb on - strand, within DvMF_1953at 2415.508 kb on - strand, within DvMF_1953at 2415.784 kb on + strandat 2416.123 kb on - strandat 2416.129 kb on + strandat 2416.157 kb on - strand, within DvMF_1955at 2416.199 kb on + strand, within DvMF_1955at 2416.496 kb on - strandat 2416.874 kb on + strand, within DvMF_1956at 2416.882 kb on - strand, within DvMF_1956at 2416.966 kb on - strand, within DvMF_1956at 2416.980 kb on + strand, within DvMF_1956at 2417.262 kb on - strand, within DvMF_1956

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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2,415,329 - DvMF_1953 0.65 +0.4
2,415,508 - DvMF_1953 0.83 -0.2
2,415,784 + -0.5
2,416,123 - -0.3
2,416,129 + -0.3
2,416,157 - DvMF_1955 0.11 -1.7
2,416,199 + DvMF_1955 0.29 -0.3
2,416,496 - +0.7
2,416,874 + DvMF_1956 0.25 -0.0
2,416,882 - DvMF_1956 0.26 -0.1
2,416,966 - DvMF_1956 0.30 +0.1
2,416,980 + DvMF_1956 0.31 +0.1
2,417,262 - DvMF_1956 0.48 -0.6

Or see this region's nucleotide sequence