Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1691

Experiment: rich MoYLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1690 and DvMF_1691 are separated by 227 nucleotidesDvMF_1691 and DvMF_1692 are separated by 296 nucleotides DvMF_1690: DvMF_1690 - polysaccharide export protein (RefSeq), at 2,057,686 to 2,059,362 _1690 DvMF_1691: DvMF_1691 - hypothetical protein (RefSeq), at 2,059,590 to 2,059,991 _1691 DvMF_1692: DvMF_1692 - PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq), at 2,060,288 to 2,061,853 _1692 Position (kb) 2059 2060Strain fitness (log2 ratio) -1 0 1at 2058.801 kb on - strand, within DvMF_1690at 2058.813 kb on - strand, within DvMF_1690at 2058.898 kb on - strand, within DvMF_1690at 2058.898 kb on - strand, within DvMF_1690at 2058.903 kb on - strand, within DvMF_1690at 2058.999 kb on + strand, within DvMF_1690at 2059.098 kb on + strand, within DvMF_1690at 2059.395 kb on + strandat 2059.547 kb on - strandat 2059.917 kb on + strand, within DvMF_1691at 2060.222 kb on + strandat 2060.376 kb on + strandat 2060.531 kb on - strand, within DvMF_1692at 2060.947 kb on - strand, within DvMF_1692

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
remove
2,058,801 - DvMF_1690 0.66 -0.5
2,058,813 - DvMF_1690 0.67 -0.7
2,058,898 - DvMF_1690 0.72 -0.5
2,058,898 - DvMF_1690 0.72 -0.0
2,058,903 - DvMF_1690 0.73 -0.4
2,058,999 + DvMF_1690 0.78 -0.5
2,059,098 + DvMF_1690 0.84 -0.7
2,059,395 + -1.5
2,059,547 - -0.0
2,059,917 + DvMF_1691 0.81 -1.1
2,060,222 + -0.2
2,060,376 + -0.2
2,060,531 - DvMF_1692 0.16 -0.3
2,060,947 - DvMF_1692 0.42 -0.4

Or see this region's nucleotide sequence