Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1478 and DvMF_1479 are separated by 103 nucleotides DvMF_1479 and DvMF_1480 overlap by 1 nucleotides DvMF_1480 and DvMF_1481 overlap by 8 nucleotides
DvMF_1478: DvMF_1478 - Extracellular ligand-binding receptor (RefSeq), at 1,812,242 to 1,813,459
_1478
DvMF_1479: DvMF_1479 - transcriptional regulator, GntR family (RefSeq), at 1,813,563 to 1,814,333
_1479
DvMF_1480: DvMF_1480 - ABC transporter related (RefSeq), at 1,814,333 to 1,815,175
_1480
DvMF_1481: DvMF_1481 - ABC transporter related (RefSeq), at 1,815,168 to 1,815,947
_1481
Position (kb)
1813
1814
1815 Strain fitness (log2 ratio)
-1
0
1 at 1812.762 kb on + strand, within DvMF_1478 at 1813.202 kb on + strand, within DvMF_1478 at 1813.205 kb on - strand, within DvMF_1478 at 1813.489 kb on - strand at 1813.635 kb on + strand at 1813.706 kb on - strand, within DvMF_1479 at 1813.812 kb on + strand, within DvMF_1479 at 1814.195 kb on + strand, within DvMF_1479 at 1814.314 kb on + strand at 1814.658 kb on - strand, within DvMF_1480 at 1814.708 kb on + strand, within DvMF_1480 at 1815.001 kb on - strand, within DvMF_1480 at 1815.039 kb on + strand, within DvMF_1480 at 1815.205 kb on - strand at 1815.218 kb on + strand at 1815.218 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 1,812,762 + DvMF_1478 0.43 -0.4 1,813,202 + DvMF_1478 0.79 +0.0 1,813,205 - DvMF_1478 0.79 -0.0 1,813,489 - -0.2 1,813,635 + -0.5 1,813,706 - DvMF_1479 0.19 -1.0 1,813,812 + DvMF_1479 0.32 -0.9 1,814,195 + DvMF_1479 0.82 -0.5 1,814,314 + -0.2 1,814,658 - DvMF_1480 0.39 -0.4 1,814,708 + DvMF_1480 0.44 -0.0 1,815,001 - DvMF_1480 0.79 -0.2 1,815,039 + DvMF_1480 0.84 -0.4 1,815,205 - -0.5 1,815,218 + -0.4 1,815,218 + -0.3
Or see this region's nucleotide sequence