Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_R0027 and DvMF_0918 are separated by 973 nucleotides DvMF_0918 and DvMF_0919 are separated by 22 nucleotides DvMF_0919 and DvMF_0920 are separated by 144 nucleotides
DvMF_R0027: DvMF_R0027 - 16S ribosomal RNA (RefSeq), at 1,108,180 to 1,109,715
_R0027
DvMF_0918: DvMF_0918 - hypothetical protein (RefSeq), at 1,110,689 to 1,111,306
_0918
DvMF_0919: DvMF_0919 - hypothetical protein (RefSeq), at 1,111,329 to 1,111,865
_0919
DvMF_0920: DvMF_0920 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,112,010 to 1,113,041
_0920
Position (kb)
1110
1111
1112 Strain fitness (log2 ratio)
-2
-1
0
1 at 1109.840 kb on + strand at 1109.986 kb on + strand at 1110.754 kb on + strand, within DvMF_0918 at 1110.759 kb on + strand, within DvMF_0918 at 1110.762 kb on - strand, within DvMF_0918 at 1110.826 kb on + strand, within DvMF_0918 at 1110.984 kb on - strand, within DvMF_0918 at 1111.108 kb on + strand, within DvMF_0918 at 1111.450 kb on + strand, within DvMF_0919 at 1111.462 kb on + strand, within DvMF_0919 at 1111.529 kb on - strand, within DvMF_0919 at 1111.560 kb on + strand, within DvMF_0919 at 1111.816 kb on + strand at 1111.868 kb on - strand at 1112.189 kb on - strand, within DvMF_0920 at 1112.203 kb on - strand, within DvMF_0920
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 1,109,840 + -0.8 1,109,986 + +0.2 1,110,754 + DvMF_0918 0.11 -1.1 1,110,759 + DvMF_0918 0.11 -1.0 1,110,762 - DvMF_0918 0.12 +0.5 1,110,826 + DvMF_0918 0.22 -2.2 1,110,984 - DvMF_0918 0.48 +0.3 1,111,108 + DvMF_0918 0.68 -0.5 1,111,450 + DvMF_0919 0.23 +0.0 1,111,462 + DvMF_0919 0.25 -1.9 1,111,529 - DvMF_0919 0.37 -0.6 1,111,560 + DvMF_0919 0.43 -1.8 1,111,816 + -1.1 1,111,868 - +0.9 1,112,189 - DvMF_0920 0.17 -0.3 1,112,203 - DvMF_0920 0.19 -0.5
Or see this region's nucleotide sequence