Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0557 and DvMF_0558 are separated by 215 nucleotides DvMF_0558 and DvMF_0559 are separated by 156 nucleotides DvMF_0559 and DvMF_0560 are separated by 39 nucleotides DvMF_0560 and dapF are separated by 52 nucleotides
DvMF_0557: DvMF_0557 - flagellar synthesis regulator FleN, putative (RefSeq), at 657,736 to 658,554
_0557
DvMF_0558: DvMF_0558 - histone family protein DNA-binding protein (RefSeq), at 658,770 to 659,045
_0558
DvMF_0559: DvMF_0559 - collagen triple helix repeat protein (RefSeq), at 659,202 to 659,684
_0559
DvMF_0560: DvMF_0560 - hypothetical protein (RefSeq), at 659,724 to 660,458
_0560
DvMF_0561: dapF - diaminopimelate epimerase (RefSeq), at 660,511 to 661,359
dapF
Position (kb) 659
660 Strain fitness (log2 ratio) -1
0
1 at 658.205 kb on + strand, within DvMF_0557 at 658.386 kb on + strand, within DvMF_0557 at 658.534 kb on + strand at 658.625 kb on - strand at 659.300 kb on - strand, within DvMF_0559 at 659.562 kb on + strand, within DvMF_0559 at 659.628 kb on - strand, within DvMF_0559 at 660.236 kb on - strand, within DvMF_0560 at 660.316 kb on - strand, within DvMF_0560 at 660.395 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 658,205 + DvMF_0557 0.57 +0.7 658,386 + DvMF_0557 0.79 +0.9 658,534 + -0.0 658,625 - +0.3 659,300 - DvMF_0559 0.20 -1.1 659,562 + DvMF_0559 0.75 -1.1 659,628 - DvMF_0559 0.88 -0.7 660,236 - DvMF_0560 0.70 -0.4 660,316 - DvMF_0560 0.81 -0.2 660,395 - -0.3
Or see this region's nucleotide sequence