Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0382 and greA are separated by 272 nucleotides greA and DvMF_0384 are separated by 424 nucleotides DvMF_0384 and DvMF_0385 are separated by 126 nucleotides
DvMF_0382: DvMF_0382 - phosphate uptake regulator, PhoU (RefSeq), at 450,195 to 450,878
_0382
DvMF_0383: greA - transcription elongation factor GreA (RefSeq), at 451,151 to 451,633
greA
DvMF_0384: DvMF_0384 - hypothetical protein (RefSeq), at 452,058 to 452,252
_0384
DvMF_0385: DvMF_0385 - hypothetical protein (RefSeq), at 452,379 to 452,804
_0385
Position (kb) 451
452 Strain fitness (log2 ratio) -1
0
1 at 450.264 kb on + strand, within DvMF_0382 at 450.373 kb on + strand, within DvMF_0382 at 450.381 kb on - strand, within DvMF_0382 at 450.388 kb on - strand, within DvMF_0382 at 450.389 kb on + strand, within DvMF_0382 at 450.516 kb on - strand, within DvMF_0382 at 450.624 kb on + strand, within DvMF_0382 at 450.644 kb on - strand, within DvMF_0382 at 450.861 kb on - strand at 451.245 kb on - strand, within greA at 451.427 kb on + strand, within greA at 451.429 kb on - strand, within greA at 451.429 kb on - strand, within greA at 451.429 kb on - strand, within greA at 451.598 kb on + strand at 451.717 kb on + strand at 451.862 kb on - strand at 451.898 kb on + strand at 452.605 kb on + strand, within DvMF_0385
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 450,264 + DvMF_0382 0.10 -0.6 450,373 + DvMF_0382 0.26 -0.8 450,381 - DvMF_0382 0.27 -0.6 450,388 - DvMF_0382 0.28 -0.3 450,389 + DvMF_0382 0.28 -0.5 450,516 - DvMF_0382 0.47 -0.1 450,624 + DvMF_0382 0.63 -0.5 450,644 - DvMF_0382 0.66 -0.2 450,861 - +0.6 451,245 - greA DvMF_0383 0.19 -0.0 451,427 + greA DvMF_0383 0.57 +0.2 451,429 - greA DvMF_0383 0.58 -0.6 451,429 - greA DvMF_0383 0.58 -0.5 451,429 - greA DvMF_0383 0.58 -0.3 451,598 + +0.9 451,717 + +0.1 451,862 - -0.1 451,898 + -0.5 452,605 + DvMF_0385 0.53 +0.1
Or see this region's nucleotide sequence