Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0277

Experiment: rich MoYLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0276 and DvMF_0277 are separated by 70 nucleotidesDvMF_0277 and DvMF_0278 are separated by 11 nucleotidesDvMF_0278 and DvMF_0279 overlap by 10 nucleotides DvMF_0276: DvMF_0276 - aspartate kinase (RefSeq), at 316,561 to 317,790 _0276 DvMF_0277: DvMF_0277 - protein of unknown function UPF0079 (RefSeq), at 317,861 to 318,538 _0277 DvMF_0278: DvMF_0278 - CBS domain containing membrane protein (RefSeq), at 318,550 to 319,002 _0278 DvMF_0279: DvMF_0279 - carbohydrate kinase, YjeF related protein (RefSeq), at 318,993 to 320,738 _0279 Position (kb) 317 318 319Strain fitness (log2 ratio) -3 -2 -1 0 1at 317.061 kb on + strand, within DvMF_0276at 317.830 kb on + strandat 317.838 kb on - strandat 317.994 kb on + strand, within DvMF_0277at 318.631 kb on - strand, within DvMF_0278at 318.715 kb on - strand, within DvMF_0278at 318.883 kb on - strand, within DvMF_0278at 319.210 kb on - strand, within DvMF_0279

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
remove
317,061 + DvMF_0276 0.41 -2.8
317,830 + -0.5
317,838 - -0.2
317,994 + DvMF_0277 0.20 -0.8
318,631 - DvMF_0278 0.18 -0.1
318,715 - DvMF_0278 0.36 -0.5
318,883 - DvMF_0278 0.74 -0.4
319,210 - DvMF_0279 0.12 -0.2

Or see this region's nucleotide sequence