Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0273 and DvMF_0274 are separated by 29 nucleotides DvMF_0274 and DvMF_0275 are separated by 520 nucleotides
DvMF_0273: DvMF_0273 - nickel-dependent hydrogenase large subunit (RefSeq), at 311,959 to 313,425
_0273
DvMF_0274: DvMF_0274 - hydrogenase (NiFe) small subunit HydA (RefSeq), at 313,455 to 314,408
_0274
DvMF_0275: DvMF_0275 - putative alpha-isopropylmalate/homocitrate synthase family transferase (RefSeq), at 314,929 to 316,551
_0275
Position (kb) 313
314
315 Strain fitness (log2 ratio) -2
-1
0
1 at 312.540 kb on + strand, within DvMF_0273 at 312.871 kb on - strand, within DvMF_0273 at 312.924 kb on + strand, within DvMF_0273 at 312.924 kb on + strand, within DvMF_0273 at 312.932 kb on - strand, within DvMF_0273 at 312.939 kb on + strand, within DvMF_0273 at 313.199 kb on + strand, within DvMF_0273 at 313.339 kb on + strand at 313.402 kb on + strand at 313.661 kb on + strand, within DvMF_0274 at 313.705 kb on - strand, within DvMF_0274 at 314.038 kb on + strand, within DvMF_0274 at 314.098 kb on + strand, within DvMF_0274 at 314.106 kb on - strand, within DvMF_0274 at 314.256 kb on + strand, within DvMF_0274 at 314.256 kb on + strand, within DvMF_0274 at 314.929 kb on + strand at 315.394 kb on - strand, within DvMF_0275
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 312,540 + DvMF_0273 0.40 -1.0 312,871 - DvMF_0273 0.62 -1.1 312,924 + DvMF_0273 0.66 -1.0 312,924 + DvMF_0273 0.66 -0.4 312,932 - DvMF_0273 0.66 -2.1 312,939 + DvMF_0273 0.67 -1.0 313,199 + DvMF_0273 0.85 -1.5 313,339 + -0.5 313,402 + +0.4 313,661 + DvMF_0274 0.22 -1.3 313,705 - DvMF_0274 0.26 -1.0 314,038 + DvMF_0274 0.61 +0.2 314,098 + DvMF_0274 0.67 -0.9 314,106 - DvMF_0274 0.68 -0.6 314,256 + DvMF_0274 0.84 -0.7 314,256 + DvMF_0274 0.84 -0.8 314,929 + +0.1 315,394 - DvMF_0275 0.29 -0.4
Or see this region's nucleotide sequence