Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0157 and DvMF_0158 are separated by 213 nucleotides DvMF_0158 and DvMF_0159 are separated by 247 nucleotides DvMF_0159 and DvMF_0160 are separated by 220 nucleotides DvMF_0160 and DvMF_0161 are separated by 151 nucleotides
DvMF_0157: DvMF_0157 - hypothetical protein (RefSeq), at 172,171 to 172,386
_0157
DvMF_0158: DvMF_0158 - HesB-like domain-containing protein (RefSeq), at 172,600 to 172,920
_0158
DvMF_0159: DvMF_0159 - HesB-like domain-containing protein (RefSeq), at 173,168 to 173,461
_0159
DvMF_0160: DvMF_0160 - bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase (RefSeq), at 173,682 to 174,215
_0160
DvMF_0161: DvMF_0161 - integral membrane protein (RefSeq), at 174,367 to 176,121
_0161
Position (kb) 173
174 Strain fitness (log2 ratio) -1
0
1 at 172.196 kb on + strand, within DvMF_0157 at 172.222 kb on + strand, within DvMF_0157 at 172.553 kb on + strand at 172.781 kb on + strand, within DvMF_0158 at 172.995 kb on + strand at 173.018 kb on - strand at 173.028 kb on + strand at 173.235 kb on + strand, within DvMF_0159 at 173.295 kb on + strand, within DvMF_0159 at 173.577 kb on - strand at 173.872 kb on - strand, within DvMF_0160 at 173.872 kb on - strand, within DvMF_0160 at 174.218 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 172,196 + DvMF_0157 0.12 -0.4 172,222 + DvMF_0157 0.24 -0.5 172,553 + -0.1 172,781 + DvMF_0158 0.56 -0.9 172,995 + +0.1 173,018 - -0.2 173,028 + +0.1 173,235 + DvMF_0159 0.23 -0.6 173,295 + DvMF_0159 0.43 -1.6 173,577 - -0.9 173,872 - DvMF_0160 0.36 -0.3 173,872 - DvMF_0160 0.36 -0.1 174,218 - -0.2
Or see this region's nucleotide sequence