Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4098

Experiment: Rifampicin 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.001 mg/ml
4,919,262	+				-0.8
4,919,347	-		Shewana3_4097	0.13	-0.5
4,919,354	+		Shewana3_4097	0.14	+0.6
4,919,354	+		Shewana3_4097	0.14	+0.8
4,919,354	+		Shewana3_4097	0.14	-0.9
4,919,354	+		Shewana3_4097	0.14	-1.7
4,919,362	-		Shewana3_4097	0.15	-1.0
4,919,362	-		Shewana3_4097	0.15	-1.1
4,919,362	-		Shewana3_4097	0.15	-0.8
4,919,362	-		Shewana3_4097	0.15	-0.8
4,919,362	-		Shewana3_4097	0.15	+0.3
4,919,362	-		Shewana3_4097	0.15	-1.0
4,919,390	-		Shewana3_4097	0.18	-0.2
4,919,391	-		Shewana3_4097	0.18	-0.5
4,919,391	-		Shewana3_4097	0.18	-0.2
4,919,391	-		Shewana3_4097	0.18	-0.8
4,919,437	-		Shewana3_4097	0.23	-1.3
4,919,452	+		Shewana3_4097	0.25	+1.8
4,919,452	+		Shewana3_4097	0.25	+0.3
4,919,454	+		Shewana3_4097	0.25	+1.8
4,919,454	+		Shewana3_4097	0.25	+4.2
4,919,454	+		Shewana3_4097	0.25	-0.8
4,919,454	+		Shewana3_4097	0.25	+0.2
4,919,460	-		Shewana3_4097	0.26	-0.4
4,919,460	-		Shewana3_4097	0.26	-0.3
4,919,460	-		Shewana3_4097	0.26	-0.9
4,919,462	-		Shewana3_4097	0.26	-0.8
4,919,462	-		Shewana3_4097	0.26	-1.5
4,919,462	-		Shewana3_4097	0.26	+1.1
4,919,462	-		Shewana3_4097	0.26	-0.7
4,919,462	-		Shewana3_4097	0.26	-0.8
4,919,462	-		Shewana3_4097	0.26	-1.0
4,919,462	-		Shewana3_4097	0.26	-0.6
4,919,529	-		Shewana3_4097	0.34	-1.0
4,919,540	+		Shewana3_4097	0.35	+0.2
4,919,540	+		Shewana3_4097	0.35	+0.8
4,919,540	+		Shewana3_4097	0.35	-1.6
4,919,540	+		Shewana3_4097	0.35	-0.2
4,919,540	+		Shewana3_4097	0.35	+0.8
4,919,540	+		Shewana3_4097	0.35	-0.2
4,919,540	+		Shewana3_4097	0.35	+0.8
4,919,540	+		Shewana3_4097	0.35	-1.8
4,919,540	+		Shewana3_4097	0.35	-1.1
4,919,540	+		Shewana3_4097	0.35	-1.1
4,919,540	+		Shewana3_4097	0.35	-3.2
4,919,540	+		Shewana3_4097	0.35	-0.5
4,919,540	+		Shewana3_4097	0.35	-0.2
4,919,540	+		Shewana3_4097	0.35	-0.8
4,919,540	+		Shewana3_4097	0.35	-0.7
4,919,540	+		Shewana3_4097	0.35	+1.8
4,919,540	+		Shewana3_4097	0.35	+0.2
4,919,540	+		Shewana3_4097	0.35	+0.2
4,919,540	+		Shewana3_4097	0.35	-1.7
4,919,540	+		Shewana3_4097	0.35	-1.8
4,919,540	+		Shewana3_4097	0.35	-0.6
4,919,540	+		Shewana3_4097	0.35	-2.1
4,919,540	+		Shewana3_4097	0.35	+0.9
4,919,540	+		Shewana3_4097	0.35	-0.6
4,919,540	+		Shewana3_4097	0.35	+0.9
4,919,542	+		Shewana3_4097	0.35	-1.0
4,919,548	-		Shewana3_4097	0.36	-0.1
4,919,548	-		Shewana3_4097	0.36	-1.8
4,919,548	-		Shewana3_4097	0.36	-1.4
4,919,548	-		Shewana3_4097	0.36	-2.5
4,919,548	-		Shewana3_4097	0.36	-0.5
4,919,548	-		Shewana3_4097	0.36	-0.3
4,919,548	-		Shewana3_4097	0.36	-0.9
4,919,548	-		Shewana3_4097	0.36	-0.3
4,919,548	-		Shewana3_4097	0.36	-1.7
4,919,548	-		Shewana3_4097	0.36	-1.0
4,919,548	-		Shewana3_4097	0.36	-1.3
4,919,548	-		Shewana3_4097	0.36	-0.8
4,919,548	-		Shewana3_4097	0.36	-0.7
4,919,548	-		Shewana3_4097	0.36	-1.5
4,919,548	-		Shewana3_4097	0.36	-1.4
4,919,548	-		Shewana3_4097	0.36	-0.7
4,919,548	-		Shewana3_4097	0.36	-1.3
4,919,548	-		Shewana3_4097	0.36	-1.0
4,919,548	-		Shewana3_4097	0.36	-1.2
4,919,548	-		Shewana3_4097	0.36	-0.8
4,919,548	-		Shewana3_4097	0.36	-0.1
4,919,548	-		Shewana3_4097	0.36	-0.4
4,919,548	-		Shewana3_4097	0.36	-0.4
4,919,548	-		Shewana3_4097	0.36	-1.9
4,919,548	-		Shewana3_4097	0.36	-1.0
4,919,548	-		Shewana3_4097	0.36	-0.6
4,919,548	-		Shewana3_4097	0.36	-0.0
4,919,548	-		Shewana3_4097	0.36	-0.9
4,919,548	-		Shewana3_4097	0.36	-0.9
4,919,548	-		Shewana3_4097	0.36	-0.7
4,919,548	-		Shewana3_4097	0.36	-0.8
4,919,548	-		Shewana3_4097	0.36	-0.7
4,919,548	-		Shewana3_4097	0.36	-0.8
4,919,548	-		Shewana3_4097	0.36	-0.9
4,919,548	-		Shewana3_4097	0.36	-0.5
4,919,548	-		Shewana3_4097	0.36	-0.3
4,919,548	-		Shewana3_4097	0.36	-0.3
4,919,548	-		Shewana3_4097	0.36	-0.8
4,919,548	-		Shewana3_4097	0.36	-0.7
4,919,548	-		Shewana3_4097	0.36	+1.2
4,919,548	-		Shewana3_4097	0.36	-1.3
4,919,548	-		Shewana3_4097	0.36	-1.4
4,919,548	-		Shewana3_4097	0.36	-0.5
4,919,548	-		Shewana3_4097	0.36	-0.9
4,919,548	-		Shewana3_4097	0.36	-2.6
4,919,548	-		Shewana3_4097	0.36	-1.5
4,919,548	-		Shewana3_4097	0.36	-0.7
4,919,548	-		Shewana3_4097	0.36	-0.8
4,919,548	-		Shewana3_4097	0.36	-1.0
4,919,548	-		Shewana3_4097	0.36	-1.0
4,919,548	-		Shewana3_4097	0.36	-1.3
4,919,548	-		Shewana3_4097	0.36	-1.0
4,919,548	-		Shewana3_4097	0.36	-0.7
4,919,550	+		Shewana3_4097	0.36	+1.8
4,919,595	-		Shewana3_4097	0.41	-1.3
4,919,597	+		Shewana3_4097	0.41	+1.8
4,919,597	+		Shewana3_4097	0.41	+0.8
4,919,605	-		Shewana3_4097	0.42	-1.3
4,919,605	-		Shewana3_4097	0.42	-1.3
4,919,605	-		Shewana3_4097	0.42	+1.8
4,919,658	+		Shewana3_4097	0.48	+0.2
4,919,660	+		Shewana3_4097	0.48	-0.6
4,919,660	+		Shewana3_4097	0.48	-1.8
4,919,660	+		Shewana3_4097	0.48	-1.8
4,919,660	+		Shewana3_4097	0.48	-1.2
4,919,660	+		Shewana3_4097	0.48	-1.1
4,919,660	+		Shewana3_4097	0.48	-0.8
4,919,660	+		Shewana3_4097	0.48	-3.1
4,919,660	+		Shewana3_4097	0.48	+1.8
4,919,668	-		Shewana3_4097	0.49	-0.4
4,919,668	-		Shewana3_4097	0.49	-0.4
4,919,668	-		Shewana3_4097	0.49	-0.9
4,919,668	-		Shewana3_4097	0.49	-0.6
4,919,668	-		Shewana3_4097	0.49	-2.7
4,919,668	-		Shewana3_4097	0.49	-1.0
4,919,668	-		Shewana3_4097	0.49	-1.0
4,919,676	-		Shewana3_4097	0.50	-0.6
4,919,688	+		Shewana3_4097	0.51	-0.7
4,919,701	+		Shewana3_4097	0.53	-1.1
4,919,701	+		Shewana3_4097	0.53	-2.7
4,919,701	+		Shewana3_4097	0.53	-2.1
4,919,701	+		Shewana3_4097	0.53	-2.8
4,919,701	+		Shewana3_4097	0.53	-0.2
4,919,701	+		Shewana3_4097	0.53	-2.0
4,919,709	-		Shewana3_4097	0.54	-0.3
4,919,709	-		Shewana3_4097	0.54	+1.4
4,919,709	-		Shewana3_4097	0.54	-2.8
4,919,710	-		Shewana3_4097	0.54	-0.4
4,919,716	+		Shewana3_4097	0.55	+1.8
4,919,735	-		Shewana3_4097	0.57	-0.5
4,919,749	-		Shewana3_4097	0.58	-0.3
4,919,828	-		Shewana3_4097	0.67	-1.5
4,919,830	+		Shewana3_4097	0.67	-1.2
4,919,835	+		Shewana3_4097	0.68	-0.0
4,919,835	+		Shewana3_4097	0.68	-1.3
4,919,843	-		Shewana3_4097	0.69	-0.4
4,919,844	-		Shewana3_4097	0.69	-0.4
4,919,844	-		Shewana3_4097	0.69	-1.2
4,919,855	+		Shewana3_4097	0.70	-0.4
4,919,855	+		Shewana3_4097	0.70	-1.1
4,919,859	+		Shewana3_4097	0.71	-0.4
4,919,863	-		Shewana3_4097	0.71	-1.2
4,919,863	-		Shewana3_4097	0.71	+1.2
4,919,867	-		Shewana3_4097	0.71	-1.2
4,919,867	-		Shewana3_4097	0.71	+0.2
4,919,903	+		Shewana3_4097	0.76	-3.0
4,919,903	+		Shewana3_4097	0.76	-0.9
4,919,903	+		Shewana3_4097	0.76	-2.0
4,919,903	+		Shewana3_4097	0.76	-0.5
4,919,903	+		Shewana3_4097	0.76	-1.7
4,919,903	+		Shewana3_4097	0.76	-0.2
4,919,903	+		Shewana3_4097	0.76	-1.1
4,919,911	-		Shewana3_4097	0.76	-1.2
4,919,911	-		Shewana3_4097	0.76	+0.1
4,919,911	-		Shewana3_4097	0.76	+0.2
4,919,911	-		Shewana3_4097	0.76	-1.4
4,919,911	-		Shewana3_4097	0.76	-0.9
4,919,913	+		Shewana3_4097	0.77	-0.7
4,919,913	+		Shewana3_4097	0.77	-1.4
4,919,913	+		Shewana3_4097	0.77	-1.8
4,919,913	+		Shewana3_4097	0.77	-2.6
4,919,913	+		Shewana3_4097	0.77	+0.6
4,919,913	+		Shewana3_4097	0.77	-1.4
4,919,913	+		Shewana3_4097	0.77	-0.9
4,919,913	+		Shewana3_4097	0.77	-0.7
4,919,913	+		Shewana3_4097	0.77	-0.2
4,919,913	+		Shewana3_4097	0.77	+0.2
4,919,913	+		Shewana3_4097	0.77	-2.5
4,919,913	+		Shewana3_4097	0.77	-0.0
4,919,913	+		Shewana3_4097	0.77	-0.4
4,919,913	+		Shewana3_4097	0.77	-1.9
4,919,913	+		Shewana3_4097	0.77	-0.7
4,919,921	-		Shewana3_4097	0.78	+1.0
4,919,921	-		Shewana3_4097	0.78	-0.7
4,919,921	-		Shewana3_4097	0.78	-0.7
4,919,921	-		Shewana3_4097	0.78	-0.9
4,919,921	-		Shewana3_4097	0.78	-0.6
4,919,921	-		Shewana3_4097	0.78	-1.1
4,919,921	-		Shewana3_4097	0.78	+2.2
4,919,921	-		Shewana3_4097	0.78	-0.7
4,919,921	-		Shewana3_4097	0.78	-0.1
4,919,921	-		Shewana3_4097	0.78	-1.0
4,919,921	-		Shewana3_4097	0.78	-0.8
4,919,921	-		Shewana3_4097	0.78	+0.2
4,919,921	-		Shewana3_4097	0.78	-1.1
4,919,921	-		Shewana3_4097	0.78	+1.1
4,919,922	-		Shewana3_4097	0.78	-0.3
4,919,922	-		Shewana3_4097	0.78	-0.7
4,919,922	-		Shewana3_4097	0.78	-1.0
4,919,933	+		Shewana3_4097	0.79	-2.5
4,919,936	-		Shewana3_4097	0.79	-1.4
4,919,940	+		Shewana3_4097	0.80	-1.8
4,919,940	+		Shewana3_4097	0.80	+0.8
4,919,941	-		Shewana3_4097	0.80	-0.5
4,919,948	-		Shewana3_4097	0.81	-1.7
4,919,956	+		Shewana3_4097	0.81	-3.2
4,920,035	+				-1.0
4,920,035	+				-1.0
4,920,043	-				-1.2
4,920,043	-				-1.2
4,920,043	-				+0.2
4,920,172	+				-1.9
4,920,180	+				-1.2
4,920,225	-				-1.2
4,920,230	+				-2.0
4,920,230	+				-1.1
4,920,230	+				-1.7
4,920,230	+				-1.1
4,920,230	+				-1.1
4,920,238	-				+1.2
4,920,238	-				-1.5
4,920,238	-				-0.8
4,920,238	-				-1.3
4,920,238	-				-0.7
4,920,238	-				+0.6
4,920,238	-				-2.2
4,920,238	-				-0.9
4,920,238	-				-1.4
4,920,269	-				-3.3
4,920,270	-				-1.0
4,920,278	+		Shewana3_4098	0.10	-1.6
4,920,278	+		Shewana3_4098	0.10	+0.4
4,920,283	+		Shewana3_4098	0.11	-0.8
4,920,286	-		Shewana3_4098	0.11	-1.7
4,920,286	-		Shewana3_4098	0.11	-1.1
4,920,288	+		Shewana3_4098	0.11	-0.1
4,920,288	+		Shewana3_4098	0.11	-1.6
4,920,372	-		Shewana3_4098	0.19	-1.2
4,920,379	-		Shewana3_4098	0.20	-1.3
4,920,394	-		Shewana3_4098	0.21	-1.3
4,920,456	-		Shewana3_4098	0.27	-0.3
4,920,458	+		Shewana3_4098	0.27	-2.5
4,920,516	-		Shewana3_4098	0.33	-0.9
4,920,581	+		Shewana3_4098	0.39	-1.5
4,920,589	-		Shewana3_4098	0.39	-1.0
4,920,589	-		Shewana3_4098	0.39	-1.2
4,920,589	-		Shewana3_4098	0.39	-1.3
4,920,617	+		Shewana3_4098	0.42	-1.0
4,920,635	-		Shewana3_4098	0.44	-0.1
4,920,662	+		Shewana3_4098	0.46	-0.0
4,920,670	-		Shewana3_4098	0.47	-1.1
4,920,702	-		Shewana3_4098	0.50	-0.9
4,920,702	-		Shewana3_4098	0.50	-1.2
4,920,702	-		Shewana3_4098	0.50	-0.9
4,920,702	-		Shewana3_4098	0.50	+0.3
4,920,757	-		Shewana3_4098	0.55	-1.3
4,920,891	+		Shewana3_4098	0.68	-2.8
4,920,899	-		Shewana3_4098	0.68	-1.1
4,920,959	-		Shewana3_4098	0.74	-1.1
4,920,983	-		Shewana3_4098	0.76	-1.4
4,921,186	+				-2.0
4,921,189	-				-1.9
4,921,194	-				-1.3
4,921,196	+				-2.5
4,921,463	-		Shewana3_4099	0.19	-0.4
4,921,484	+		Shewana3_4099	0.21	-0.3
4,921,498	-		Shewana3_4099	0.22	-0.8
4,921,681	+		Shewana3_4099	0.39	-1.5
4,921,694	+		Shewana3_4099	0.40	-1.6
4,921,878	+		Shewana3_4099	0.57	-2.3
4,921,892	+		Shewana3_4099	0.58	-0.0
4,921,956	+		Shewana3_4099	0.64	-1.2
4,921,964	-		Shewana3_4099	0.65	-0.6
4,921,979	+		Shewana3_4099	0.66	-1.2
4,922,028	-		Shewana3_4099	0.71	-0.8
4,922,093	-		Shewana3_4099	0.77	-0.1