Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3554

Experiment: Rifampicin 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.001 mg/ml
4,260,291	-				+2.0
4,260,307	-				+0.4
4,260,388	+		Shewana3_3553	0.16	-1.0
4,260,398	-		Shewana3_3553	0.17	+0.6
4,260,538	+		Shewana3_3553	0.31	-0.9
4,260,566	+		Shewana3_3553	0.34	+0.1
4,260,858	-		Shewana3_3553	0.64	-0.4
4,260,879	+		Shewana3_3553	0.66	-0.3
4,260,887	-		Shewana3_3553	0.66	-0.3
4,260,887	-		Shewana3_3553	0.66	-0.0
4,260,887	-		Shewana3_3553	0.66	-0.1
4,260,887	-		Shewana3_3553	0.66	-0.5
4,260,901	-		Shewana3_3553	0.68	-0.5
4,260,957	-		Shewana3_3553	0.74	-0.5
4,260,985	+		Shewana3_3553	0.76	-0.7
4,260,985	+		Shewana3_3553	0.76	-0.3
4,260,993	-		Shewana3_3553	0.77	+0.2
4,260,993	-		Shewana3_3553	0.77	-0.1
4,261,005	+		Shewana3_3553	0.78	-0.4
4,261,007	-		Shewana3_3553	0.79	-0.5
4,261,133	+				+0.1
4,261,339	+				-0.2
4,261,509	+		Shewana3_3554	0.18	-3.5
4,261,570	-		Shewana3_3554	0.22	-0.5
4,261,590	-		Shewana3_3554	0.24	-0.2
4,261,601	-		Shewana3_3554	0.25	-0.1
4,261,609	-		Shewana3_3554	0.25	-0.6
4,261,658	-		Shewana3_3554	0.29	-0.8
4,261,686	+		Shewana3_3554	0.31	-0.3
4,261,691	+		Shewana3_3554	0.31	-0.3
4,261,691	+		Shewana3_3554	0.31	-0.4
4,261,696	+		Shewana3_3554	0.31	-0.5
4,261,699	-		Shewana3_3554	0.32	-0.1
4,261,846	-		Shewana3_3554	0.42	-0.2
4,261,908	+		Shewana3_3554	0.46	-0.3
4,261,932	-		Shewana3_3554	0.48	-0.8
4,261,950	-		Shewana3_3554	0.49	-0.7
4,261,986	+		Shewana3_3554	0.52	-1.5
4,262,018	+		Shewana3_3554	0.54	+1.3
4,262,086	-		Shewana3_3554	0.59	-1.8
4,262,086	-		Shewana3_3554	0.59	-1.5
4,262,088	+		Shewana3_3554	0.59	-0.5
4,262,088	+		Shewana3_3554	0.59	-0.1
4,262,088	+		Shewana3_3554	0.59	-0.3
4,262,088	+		Shewana3_3554	0.59	-0.2
4,262,091	-		Shewana3_3554	0.59	+0.4
4,262,096	-		Shewana3_3554	0.60	+0.3
4,262,376	-		Shewana3_3554	0.79	+0.7
4,262,378	+		Shewana3_3554	0.79	-0.1
4,262,534	-				-0.4
4,262,576	+				-1.8
4,262,596	+				-0.4
4,262,672	-				+0.1
4,262,672	-				-1.3
4,262,717	-				-0.1
4,263,129	+		Shewana3_3555	0.27	-0.5
4,263,169	-		Shewana3_3555	0.29	+0.1
4,263,396	-		Shewana3_3555	0.42	+0.3
4,263,410	+		Shewana3_3555	0.43	-0.9
4,263,494	+		Shewana3_3555	0.48	-1.2