Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3441 and Shewana3_3442 are separated by 180 nucleotides Shewana3_3442 and Shewana3_3443 are separated by 129 nucleotides Shewana3_3443 and Shewana3_3444 are separated by 8 nucleotides Shewana3_3444 and Shewana3_3445 are separated by 106 nucleotides
Shewana3_3441: Shewana3_3441 - hypothetical protein (RefSeq), at 4,123,590 to 4,124,747
_3441
Shewana3_3442: Shewana3_3442 - hypothetical protein (RefSeq), at 4,124,928 to 4,125,533
_3442
Shewana3_3443: Shewana3_3443 - endonuclease I (RefSeq), at 4,125,663 to 4,126,436
_3443
Shewana3_3444: Shewana3_3444 - 16S ribosomal RNA methyltransferase RsmE (RefSeq), at 4,126,445 to 4,127,176
_3444
Shewana3_3445: Shewana3_3445 - glutathione synthetase (RefSeq), at 4,127,283 to 4,128,230
_3445
Position (kb) 4125
4126
4127 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4124.664 kb on - strand at 4124.729 kb on + strand at 4124.834 kb on + strand at 4124.842 kb on - strand at 4124.842 kb on - strand at 4124.872 kb on + strand at 4125.175 kb on + strand, within Shewana3_3442 at 4125.215 kb on - strand, within Shewana3_3442 at 4125.215 kb on - strand, within Shewana3_3442 at 4125.341 kb on + strand, within Shewana3_3442 at 4125.348 kb on - strand, within Shewana3_3442 at 4125.353 kb on + strand, within Shewana3_3442 at 4125.681 kb on + strand at 4125.681 kb on + strand at 4125.689 kb on - strand at 4125.689 kb on - strand at 4125.850 kb on - strand, within Shewana3_3443 at 4125.907 kb on - strand, within Shewana3_3443 at 4126.008 kb on - strand, within Shewana3_3443 at 4126.026 kb on + strand, within Shewana3_3443 at 4126.070 kb on - strand, within Shewana3_3443 at 4126.070 kb on - strand, within Shewana3_3443 at 4126.320 kb on + strand, within Shewana3_3443 at 4126.351 kb on - strand, within Shewana3_3443 at 4126.510 kb on + strand at 4126.513 kb on - strand at 4126.518 kb on - strand at 4126.535 kb on + strand, within Shewana3_3444 at 4126.640 kb on - strand, within Shewana3_3444 at 4126.791 kb on + strand, within Shewana3_3444 at 4127.005 kb on - strand, within Shewana3_3444 at 4127.108 kb on - strand at 4127.200 kb on + strand at 4127.369 kb on + strand at 4127.369 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 4,124,664 - -0.9 4,124,729 + -0.1 4,124,834 + -0.4 4,124,842 - -0.4 4,124,842 - -0.3 4,124,872 + -0.6 4,125,175 + Shewana3_3442 0.41 -0.3 4,125,215 - Shewana3_3442 0.47 -0.2 4,125,215 - Shewana3_3442 0.47 +0.1 4,125,341 + Shewana3_3442 0.68 +0.1 4,125,348 - Shewana3_3442 0.69 +0.6 4,125,353 + Shewana3_3442 0.70 +0.1 4,125,681 + -2.4 4,125,681 + +0.8 4,125,689 - -0.1 4,125,689 - -1.0 4,125,850 - Shewana3_3443 0.24 -1.4 4,125,907 - Shewana3_3443 0.32 -1.1 4,126,008 - Shewana3_3443 0.45 -1.8 4,126,026 + Shewana3_3443 0.47 -1.4 4,126,070 - Shewana3_3443 0.53 -0.9 4,126,070 - Shewana3_3443 0.53 -0.6 4,126,320 + Shewana3_3443 0.85 +0.3 4,126,351 - Shewana3_3443 0.89 -3.0 4,126,510 + +0.1 4,126,513 - -3.3 4,126,518 - -2.4 4,126,535 + Shewana3_3444 0.12 -0.1 4,126,640 - Shewana3_3444 0.27 -3.3 4,126,791 + Shewana3_3444 0.47 +0.2 4,127,005 - Shewana3_3444 0.77 -3.4 4,127,108 - -3.5 4,127,200 + +0.3 4,127,369 + -0.1 4,127,369 + +0.8
Or see this region's nucleotide sequence