Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3309

Experiment: Rifampicin 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.001 mg/ml
3,970,091	+		Shewana3_3308	0.21	-1.1
3,970,096	-		Shewana3_3308	0.21	-0.1
3,970,096	-		Shewana3_3308	0.21	-0.8
3,970,122	+		Shewana3_3308	0.23	-1.1
3,970,184	-		Shewana3_3308	0.28	-0.8
3,970,361	-		Shewana3_3308	0.43	-1.5
3,970,378	-		Shewana3_3308	0.44	+0.1
3,970,449	-		Shewana3_3308	0.50	-3.2
3,970,679	-		Shewana3_3308	0.68	-0.2
3,970,902	-		Shewana3_3308	0.87	-0.1
3,970,930	-		Shewana3_3308	0.89	+0.4
3,970,993	+				-0.5
3,971,108	-				-0.5
3,971,153	-				+2.1
3,971,275	-	rumB	Shewana3_3309	0.17	-1.0
3,971,407	-	rumB	Shewana3_3309	0.28	+0.5
3,971,466	+	rumB	Shewana3_3309	0.33	-0.6
3,971,535	+	rumB	Shewana3_3309	0.39	-1.4
3,971,857	+	rumB	Shewana3_3309	0.67	-2.4
3,971,865	-	rumB	Shewana3_3309	0.68	-0.4
3,971,865	-	rumB	Shewana3_3309	0.68	-0.1
3,971,865	-	rumB	Shewana3_3309	0.68	+0.2
3,971,875	+	rumB	Shewana3_3309	0.69	-0.6
3,971,997	+	rumB	Shewana3_3309	0.79	-0.6
3,972,017	-	rumB	Shewana3_3309	0.81	-0.2
3,972,168	-				-0.4
3,972,240	+				-2.4
3,972,240	+				+0.3
3,972,250	+				+1.0
3,972,385	-				-0.2
3,972,481	+				-0.7
3,972,481	+				-0.6
3,972,563	+		Shewana3_3310	0.12	-1.4
3,972,681	+		Shewana3_3310	0.22	-2.2
3,972,921	+		Shewana3_3310	0.42	-2.5
3,972,941	-		Shewana3_3310	0.44	-0.0
3,972,971	+		Shewana3_3310	0.47	+0.3
3,973,002	-		Shewana3_3310	0.49	-0.0
3,973,123	-		Shewana3_3310	0.59	-0.1
3,973,148	+		Shewana3_3310	0.62	-0.7
3,973,154	-		Shewana3_3310	0.62	-0.8
3,973,156	-		Shewana3_3310	0.62	+0.3
3,973,176	-		Shewana3_3310	0.64	+0.4
3,973,182	+		Shewana3_3310	0.64	-1.5
3,973,190	-		Shewana3_3310	0.65	+1.0