Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3210
Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Rifampicin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,854,347 | + | ksgA | Shewana3_3209 | 0.86 | +1.0 |
3,854,495 | - | -0.3 | |||
3,854,505 | - | +2.0 | |||
3,854,571 | + | apaG | Shewana3_3210 | 0.15 | +0.4 |
3,854,825 | + | apaG | Shewana3_3210 | 0.82 | -1.5 |
3,854,994 | + | -1.8 | |||
3,855,312 | - | apaH | Shewana3_3211 | 0.48 | -0.6 |
3,855,338 | + | apaH | Shewana3_3211 | 0.51 | +1.1 |
3,855,413 | + | apaH | Shewana3_3211 | 0.60 | -1.2 |
3,855,759 | + | +0.4 | |||
3,855,759 | + | +0.5 |
Or see this region's nucleotide sequence