Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3189

Experiment: Rifampicin 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.001 mg/ml
3,826,082	-	cysM	Shewana3_3188	0.11	+0.9
3,826,136	+	cysM	Shewana3_3188	0.17	+0.3
3,826,136	+	cysM	Shewana3_3188	0.17	-0.2
3,826,136	+	cysM	Shewana3_3188	0.17	+1.0
3,826,326	-	cysM	Shewana3_3188	0.38	-0.2
3,826,336	-	cysM	Shewana3_3188	0.39	+1.7
3,826,542	+	cysM	Shewana3_3188	0.63	-1.1
3,826,550	-	cysM	Shewana3_3188	0.64	+1.2
3,826,560	+	cysM	Shewana3_3188	0.65	+2.6
3,826,675	-	cysM	Shewana3_3188	0.78	+0.2
3,826,724	-	cysM	Shewana3_3188	0.84	+1.4
3,826,731	+	cysM	Shewana3_3188	0.84	+1.4
3,826,755	+	cysM	Shewana3_3188	0.87	-1.7
3,826,763	-	cysM	Shewana3_3188	0.88	-0.4
3,826,765	-	cysM	Shewana3_3188	0.88	+0.1
3,826,841	+				-0.1
3,827,208	-		Shewana3_3189	0.13	+0.8
3,827,282	+		Shewana3_3189	0.21	+0.5
3,827,282	+		Shewana3_3189	0.21	+0.7
3,827,287	+		Shewana3_3189	0.21	-0.3
3,827,290	-		Shewana3_3189	0.21	-1.5
3,827,420	+		Shewana3_3189	0.34	+0.8
3,827,564	+		Shewana3_3189	0.49	+0.8
3,827,564	+		Shewana3_3189	0.49	+0.3
3,827,564	+		Shewana3_3189	0.49	+0.1
3,827,610	+		Shewana3_3189	0.53	-0.4
3,828,004	+				+0.3
3,828,239	+				-0.1
3,828,247	-				+0.1
3,828,324	+				+0.3
3,828,324	+				+0.2
3,828,324	+				-0.5
3,828,332	-				-0.0
3,828,332	-				+0.6
3,828,603	-		Shewana3_3190	0.40	+1.3
3,828,695	+		Shewana3_3190	0.51	+0.4
3,828,695	+		Shewana3_3190	0.51	+1.1
3,828,703	-		Shewana3_3190	0.52	-0.3
3,828,802	+		Shewana3_3190	0.63	-0.1
3,828,804	+		Shewana3_3190	0.64	-0.5
3,828,861	-		Shewana3_3190	0.70	-0.4
3,828,884	-		Shewana3_3190	0.73	-0.1
3,828,886	+		Shewana3_3190	0.73	+0.1
3,828,908	-		Shewana3_3190	0.76	-1.0
3,828,908	-		Shewana3_3190	0.76	-1.0
3,828,944	+		Shewana3_3190	0.80	+0.8
3,828,952	-		Shewana3_3190	0.81	+2.8
3,829,077	-				+1.2