Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3011
Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Rifampicin 0.001 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 3,616,431 | + | Shewana3_3010 | 0.36 | -0.8 | |
| 3,616,519 | - | Shewana3_3010 | 0.44 | -0.3 | |
| 3,616,601 | + | Shewana3_3010 | 0.51 | -1.4 | |
| 3,616,601 | + | Shewana3_3010 | 0.51 | +0.0 | |
| 3,616,641 | + | Shewana3_3010 | 0.54 | -1.0 | |
| 3,617,052 | + | -0.7 | |||
| 3,617,160 | + | -0.2 | |||
| 3,617,474 | - | Shewana3_3011 | 0.16 | +0.8 | |
| 3,617,945 | - | Shewana3_3011 | 0.44 | -0.9 | |
| 3,618,048 | + | Shewana3_3011 | 0.50 | -1.4 | |
| 3,618,198 | - | Shewana3_3011 | 0.59 | -1.4 | |
| 3,618,330 | - | Shewana3_3011 | 0.67 | -0.8 | |
| 3,618,417 | - | Shewana3_3011 | 0.72 | -0.5 | |
| 3,618,417 | - | Shewana3_3011 | 0.72 | -0.0 | |
| 3,618,608 | - | Shewana3_3011 | 0.84 | -1.4 | |
| 3,618,704 | - | Shewana3_3011 | 0.89 | +1.0 | |
| 3,618,709 | - | Shewana3_3011 | 0.90 | +0.2 | |
| 3,619,844 | + | tyrA | Shewana3_3012 | 0.66 | +0.0 |
Or see this region's nucleotide sequence