Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2957 and Shewana3_2958 are separated by 44 nucleotides Shewana3_2958 and Shewana3_2959 overlap by 1 nucleotides Shewana3_2959 and Shewana3_2960 are separated by 20 nucleotides
Shewana3_2957: Shewana3_2957 - HNH endonuclease (RefSeq), at 3,550,768 to 3,551,529
_2957
Shewana3_2958: Shewana3_2958 - hypothetical protein (RefSeq), at 3,551,574 to 3,552,383
_2958
Shewana3_2959: Shewana3_2959 - hypothetical protein (RefSeq), at 3,552,383 to 3,553,984
_2959
Shewana3_2960: Shewana3_2960 - restriction modification system DNA specificity subunit (RefSeq), at 3,554,005 to 3,555,768
_2960
Position (kb)
3552
3553
3554 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3551.389 kb on - strand, within Shewana3_2957 at 3551.482 kb on - strand at 3551.519 kb on - strand at 3551.519 kb on - strand at 3551.940 kb on - strand, within Shewana3_2958 at 3552.141 kb on - strand, within Shewana3_2958 at 3552.307 kb on + strand at 3552.315 kb on - strand at 3552.353 kb on + strand at 3552.486 kb on - strand at 3552.666 kb on + strand, within Shewana3_2959 at 3552.775 kb on + strand, within Shewana3_2959 at 3552.780 kb on + strand, within Shewana3_2959 at 3552.878 kb on - strand, within Shewana3_2959 at 3553.074 kb on + strand, within Shewana3_2959 at 3553.129 kb on - strand, within Shewana3_2959 at 3553.311 kb on - strand, within Shewana3_2959 at 3553.372 kb on - strand, within Shewana3_2959 at 3553.419 kb on + strand, within Shewana3_2959 at 3553.427 kb on - strand, within Shewana3_2959 at 3553.718 kb on + strand, within Shewana3_2959 at 3553.787 kb on + strand, within Shewana3_2959 at 3553.899 kb on + strand at 3553.899 kb on + strand at 3554.002 kb on + strand at 3554.010 kb on - strand at 3554.028 kb on - strand at 3554.202 kb on + strand, within Shewana3_2960 at 3554.342 kb on - strand, within Shewana3_2960 at 3554.366 kb on + strand, within Shewana3_2960 at 3554.413 kb on + strand, within Shewana3_2960 at 3554.416 kb on - strand, within Shewana3_2960 at 3554.427 kb on + strand, within Shewana3_2960 at 3554.496 kb on + strand, within Shewana3_2960 at 3554.596 kb on + strand, within Shewana3_2960 at 3554.604 kb on - strand, within Shewana3_2960 at 3554.702 kb on - strand, within Shewana3_2960 at 3554.729 kb on + strand, within Shewana3_2960 at 3554.737 kb on - strand, within Shewana3_2960 at 3554.748 kb on + strand, within Shewana3_2960 at 3554.756 kb on - strand, within Shewana3_2960 at 3554.805 kb on - strand, within Shewana3_2960 at 3554.805 kb on - strand, within Shewana3_2960 at 3554.885 kb on - strand, within Shewana3_2960 at 3554.976 kb on + strand, within Shewana3_2960 at 3554.983 kb on - strand, within Shewana3_2960 at 3554.984 kb on - strand, within Shewana3_2960
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 3,551,389 - Shewana3_2957 0.81 -0.3 3,551,482 - +1.1 3,551,519 - +0.0 3,551,519 - +0.4 3,551,940 - Shewana3_2958 0.45 -1.1 3,552,141 - Shewana3_2958 0.70 +0.3 3,552,307 + +0.4 3,552,315 - +0.9 3,552,353 + +1.8 3,552,486 - -1.3 3,552,666 + Shewana3_2959 0.18 +1.1 3,552,775 + Shewana3_2959 0.24 -0.1 3,552,780 + Shewana3_2959 0.25 -0.2 3,552,878 - Shewana3_2959 0.31 -1.2 3,553,074 + Shewana3_2959 0.43 -1.1 3,553,129 - Shewana3_2959 0.47 -0.7 3,553,311 - Shewana3_2959 0.58 +0.6 3,553,372 - Shewana3_2959 0.62 +1.0 3,553,419 + Shewana3_2959 0.65 +1.1 3,553,427 - Shewana3_2959 0.65 +0.1 3,553,718 + Shewana3_2959 0.83 +0.1 3,553,787 + Shewana3_2959 0.88 -1.3 3,553,899 + -1.0 3,553,899 + -0.6 3,554,002 + -0.5 3,554,010 - -0.6 3,554,028 - -1.3 3,554,202 + Shewana3_2960 0.11 -0.9 3,554,342 - Shewana3_2960 0.19 -0.3 3,554,366 + Shewana3_2960 0.20 -1.8 3,554,413 + Shewana3_2960 0.23 -2.4 3,554,416 - Shewana3_2960 0.23 -1.3 3,554,427 + Shewana3_2960 0.24 -2.0 3,554,496 + Shewana3_2960 0.28 -2.0 3,554,596 + Shewana3_2960 0.34 -2.2 3,554,604 - Shewana3_2960 0.34 +1.0 3,554,702 - Shewana3_2960 0.40 -0.5 3,554,729 + Shewana3_2960 0.41 +1.1 3,554,737 - Shewana3_2960 0.41 +0.4 3,554,748 + Shewana3_2960 0.42 -1.8 3,554,756 - Shewana3_2960 0.43 -0.6 3,554,805 - Shewana3_2960 0.45 -0.4 3,554,805 - Shewana3_2960 0.45 -0.4 3,554,885 - Shewana3_2960 0.50 +0.3 3,554,976 + Shewana3_2960 0.55 -0.5 3,554,983 - Shewana3_2960 0.55 +0.0 3,554,984 - Shewana3_2960 0.55 -1.0
Or see this region's nucleotide sequence