Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2862 and Shewana3_2863 are separated by 230 nucleotides Shewana3_2863 and Shewana3_2864 are separated by 62 nucleotides Shewana3_2864 and Shewana3_2865 are separated by 155 nucleotides
Shewana3_2862: Shewana3_2862 - TonB-dependent heme/hemoglobin receptor family protein (RefSeq), at 3,421,055 to 3,423,268
_2862
Shewana3_2863: Shewana3_2863 - hypothetical protein (RefSeq), at 3,423,499 to 3,424,206
_2863
Shewana3_2864: Shewana3_2864 - TetR family transcriptional regulator (RefSeq), at 3,424,269 to 3,424,880
_2864
Shewana3_2865: Shewana3_2865 - glutathione S-transferase domain-containing protein (RefSeq), at 3,425,036 to 3,425,662
_2865
Position (kb)
3423
3424
3425 Strain fitness (log2 ratio)
-2
-1
0
1 at 3422.511 kb on - strand, within Shewana3_2862 at 3422.832 kb on + strand, within Shewana3_2862 at 3423.288 kb on - strand at 3423.435 kb on + strand at 3423.440 kb on + strand at 3423.512 kb on + strand at 3423.630 kb on + strand, within Shewana3_2863 at 3423.638 kb on + strand, within Shewana3_2863 at 3423.646 kb on - strand, within Shewana3_2863 at 3423.972 kb on - strand, within Shewana3_2863 at 3424.144 kb on - strand at 3424.379 kb on - strand, within Shewana3_2864 at 3424.443 kb on - strand, within Shewana3_2864 at 3424.526 kb on - strand, within Shewana3_2864 at 3424.573 kb on + strand, within Shewana3_2864 at 3424.592 kb on - strand, within Shewana3_2864 at 3424.810 kb on - strand, within Shewana3_2864 at 3425.067 kb on + strand at 3425.197 kb on + strand, within Shewana3_2865
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 3,422,511 - Shewana3_2862 0.66 -0.0 3,422,832 + Shewana3_2862 0.80 +0.2 3,423,288 - -0.2 3,423,435 + -0.5 3,423,440 + -2.1 3,423,512 + -0.3 3,423,630 + Shewana3_2863 0.19 +1.4 3,423,638 + Shewana3_2863 0.20 -1.0 3,423,646 - Shewana3_2863 0.21 -0.6 3,423,972 - Shewana3_2863 0.67 +0.3 3,424,144 - -0.4 3,424,379 - Shewana3_2864 0.18 -2.1 3,424,443 - Shewana3_2864 0.28 +1.0 3,424,526 - Shewana3_2864 0.42 +0.6 3,424,573 + Shewana3_2864 0.50 +0.2 3,424,592 - Shewana3_2864 0.53 +0.4 3,424,810 - Shewana3_2864 0.88 +0.5 3,425,067 + -0.3 3,425,197 + Shewana3_2865 0.26 -0.1
Or see this region's nucleotide sequence