Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2845
Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Rifampicin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,404,515 | + | +0.6 | |||
3,404,536 | - | -0.2 | |||
3,404,536 | - | -0.7 | |||
3,404,536 | - | -1.0 | |||
3,404,576 | + | -1.1 | |||
3,404,747 | - | +0.1 | |||
3,404,831 | - | -1.3 | |||
3,405,059 | + | Shewana3_2844 | 0.32 | -2.1 | |
3,405,067 | - | Shewana3_2844 | 0.35 | -0.3 | |
3,405,113 | - | Shewana3_2844 | 0.50 | -1.7 | |
3,405,118 | + | Shewana3_2844 | 0.51 | +0.9 | |
3,405,205 | - | Shewana3_2844 | 0.79 | -0.4 | |
3,405,279 | + | +0.2 | |||
3,405,522 | + | Shewana3_2845 | 0.18 | -1.5 | |
3,405,830 | - | +0.2 | |||
3,405,879 | + | -0.9 | |||
3,405,887 | - | +0.5 | |||
3,406,231 | + | -0.3 | |||
3,406,240 | - | +0.8 | |||
3,406,308 | - | -0.6 | |||
3,406,308 | - | -0.8 |
Or see this region's nucleotide sequence