Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2824 and Shewana3_2825 overlap by 14 nucleotides Shewana3_2825 and Shewana3_2826 are separated by 131 nucleotides Shewana3_2826 and Shewana3_2827 overlap by 4 nucleotides
Shewana3_2824: Shewana3_2824 - tRNA pseudouridine synthase C (RefSeq), at 3,373,305 to 3,374,159
_2824
Shewana3_2825: Shewana3_2825 - dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq), at 3,374,146 to 3,374,481
_2825
Shewana3_2826: Shewana3_2826 - hypothetical protein (RefSeq), at 3,374,613 to 3,375,626
_2826
Shewana3_2827: Shewana3_2827 - hypothetical protein (RefSeq), at 3,375,623 to 3,376,009
_2827
Position (kb)
3374
3375
3376 Strain fitness (log2 ratio)
-1
0
1
2 at 3373.744 kb on + strand, within Shewana3_2824 at 3373.773 kb on + strand, within Shewana3_2824 at 3373.781 kb on + strand, within Shewana3_2824 at 3373.781 kb on - strand, within Shewana3_2824 at 3373.991 kb on + strand, within Shewana3_2824 at 3373.991 kb on + strand, within Shewana3_2824 at 3374.046 kb on - strand, within Shewana3_2824 at 3374.080 kb on - strand at 3374.080 kb on - strand at 3374.199 kb on - strand, within Shewana3_2825 at 3374.224 kb on + strand, within Shewana3_2825 at 3374.243 kb on - strand, within Shewana3_2825 at 3374.289 kb on - strand, within Shewana3_2825 at 3374.290 kb on - strand, within Shewana3_2825 at 3374.338 kb on - strand, within Shewana3_2825 at 3374.396 kb on + strand, within Shewana3_2825 at 3374.486 kb on - strand at 3374.755 kb on - strand, within Shewana3_2826 at 3374.765 kb on - strand, within Shewana3_2826 at 3374.842 kb on + strand, within Shewana3_2826 at 3374.891 kb on + strand, within Shewana3_2826 at 3375.007 kb on - strand, within Shewana3_2826 at 3375.098 kb on + strand, within Shewana3_2826 at 3375.117 kb on + strand, within Shewana3_2826 at 3375.201 kb on + strand, within Shewana3_2826 at 3375.388 kb on + strand, within Shewana3_2826 at 3375.398 kb on + strand, within Shewana3_2826 at 3375.411 kb on + strand, within Shewana3_2826 at 3375.433 kb on + strand, within Shewana3_2826 at 3375.433 kb on + strand, within Shewana3_2826 at 3375.434 kb on - strand, within Shewana3_2826 at 3375.458 kb on + strand, within Shewana3_2826 at 3375.605 kb on + strand at 3375.698 kb on + strand, within Shewana3_2827 at 3376.079 kb on + strand at 3376.087 kb on - strand at 3376.164 kb on + strand at 3376.170 kb on - strand at 3376.385 kb on - strand at 3376.414 kb on + strand at 3376.422 kb on - strand at 3376.466 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 3,373,744 + Shewana3_2824 0.51 -0.8 3,373,773 + Shewana3_2824 0.55 -0.4 3,373,781 + Shewana3_2824 0.56 +0.9 3,373,781 - Shewana3_2824 0.56 +0.5 3,373,991 + Shewana3_2824 0.80 +0.2 3,373,991 + Shewana3_2824 0.80 -1.3 3,374,046 - Shewana3_2824 0.87 +0.4 3,374,080 - -0.4 3,374,080 - -0.3 3,374,199 - Shewana3_2825 0.16 -0.0 3,374,224 + Shewana3_2825 0.23 +0.6 3,374,243 - Shewana3_2825 0.29 +0.2 3,374,289 - Shewana3_2825 0.43 +0.2 3,374,290 - Shewana3_2825 0.43 -0.3 3,374,338 - Shewana3_2825 0.57 +0.4 3,374,396 + Shewana3_2825 0.74 -0.6 3,374,486 - +0.7 3,374,755 - Shewana3_2826 0.14 +0.0 3,374,765 - Shewana3_2826 0.15 -0.7 3,374,842 + Shewana3_2826 0.23 -0.7 3,374,891 + Shewana3_2826 0.27 -0.6 3,375,007 - Shewana3_2826 0.39 +0.6 3,375,098 + Shewana3_2826 0.48 -1.0 3,375,117 + Shewana3_2826 0.50 -0.3 3,375,201 + Shewana3_2826 0.58 +0.6 3,375,388 + Shewana3_2826 0.76 +0.4 3,375,398 + Shewana3_2826 0.77 -0.4 3,375,411 + Shewana3_2826 0.79 +0.1 3,375,433 + Shewana3_2826 0.81 -1.7 3,375,433 + Shewana3_2826 0.81 +0.1 3,375,434 - Shewana3_2826 0.81 -1.1 3,375,458 + Shewana3_2826 0.83 -0.6 3,375,605 + -0.4 3,375,698 + Shewana3_2827 0.19 +0.8 3,376,079 + +0.6 3,376,087 - -0.8 3,376,164 + +0.2 3,376,170 - +0.5 3,376,385 - +1.3 3,376,414 + +2.2 3,376,422 - +0.6 3,376,466 + -0.1
Or see this region's nucleotide sequence