Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2777

Experiment: Rifampicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2776 and Shewana3_2777 are separated by 98 nucleotidesShewana3_2777 and Shewana3_2778 are separated by 84 nucleotides Shewana3_2776: Shewana3_2776 - hypothetical protein (RefSeq), at 3,315,385 to 3,315,972 _2776 Shewana3_2777: Shewana3_2777 - maleylacetoacetate isomerase (RefSeq), at 3,316,071 to 3,316,721 _2777 Shewana3_2778: Shewana3_2778 - fumarylacetoacetate (FAA) hydrolase (RefSeq), at 3,316,806 to 3,317,792 _2778 Position (kb) 3316 3317Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3315.074 kb on + strandat 3315.144 kb on + strandat 3315.345 kb on + strandat 3315.374 kb on + strandat 3315.796 kb on + strand, within Shewana3_2776at 3315.798 kb on + strand, within Shewana3_2776at 3315.806 kb on - strand, within Shewana3_2776at 3315.806 kb on - strand, within Shewana3_2776at 3315.913 kb on - strand, within Shewana3_2776at 3315.924 kb on - strandat 3315.929 kb on - strandat 3315.946 kb on - strandat 3316.068 kb on + strandat 3316.135 kb on + strandat 3316.135 kb on + strandat 3316.200 kb on - strand, within Shewana3_2777at 3316.324 kb on + strand, within Shewana3_2777at 3316.357 kb on + strand, within Shewana3_2777at 3316.517 kb on - strand, within Shewana3_2777at 3316.732 kb on + strandat 3316.803 kb on + strandat 3316.975 kb on + strand, within Shewana3_2778at 3317.037 kb on + strand, within Shewana3_2778at 3317.265 kb on + strand, within Shewana3_2778at 3317.307 kb on - strand, within Shewana3_2778at 3317.391 kb on + strand, within Shewana3_2778at 3317.400 kb on - strand, within Shewana3_2778at 3317.535 kb on - strand, within Shewana3_2778

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml
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3,315,074 + -0.7
3,315,144 + -0.4
3,315,345 + +2.8
3,315,374 + +1.0
3,315,796 + Shewana3_2776 0.70 -0.8
3,315,798 + Shewana3_2776 0.70 +0.2
3,315,806 - Shewana3_2776 0.72 -0.8
3,315,806 - Shewana3_2776 0.72 -1.1
3,315,913 - Shewana3_2776 0.90 +0.0
3,315,924 - -0.5
3,315,929 - +0.2
3,315,946 - -1.3
3,316,068 + +1.2
3,316,135 + -1.5
3,316,135 + +0.2
3,316,200 - Shewana3_2777 0.20 -2.1
3,316,324 + Shewana3_2777 0.39 -0.1
3,316,357 + Shewana3_2777 0.44 +0.7
3,316,517 - Shewana3_2777 0.69 +0.4
3,316,732 + +0.1
3,316,803 + +0.6
3,316,975 + Shewana3_2778 0.17 -1.0
3,317,037 + Shewana3_2778 0.23 -0.4
3,317,265 + Shewana3_2778 0.47 -0.1
3,317,307 - Shewana3_2778 0.51 -0.1
3,317,391 + Shewana3_2778 0.59 -0.4
3,317,400 - Shewana3_2778 0.60 +0.3
3,317,535 - Shewana3_2778 0.74 -0.6

Or see this region's nucleotide sequence