Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2777
Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Rifampicin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,315,074 | + | -0.7 | |||
3,315,144 | + | -0.4 | |||
3,315,345 | + | +2.8 | |||
3,315,374 | + | +1.0 | |||
3,315,796 | + | Shewana3_2776 | 0.70 | -0.8 | |
3,315,798 | + | Shewana3_2776 | 0.70 | +0.2 | |
3,315,806 | - | Shewana3_2776 | 0.72 | -0.8 | |
3,315,806 | - | Shewana3_2776 | 0.72 | -1.1 | |
3,315,913 | - | Shewana3_2776 | 0.90 | +0.0 | |
3,315,924 | - | -0.5 | |||
3,315,929 | - | +0.2 | |||
3,315,946 | - | -1.3 | |||
3,316,068 | + | +1.2 | |||
3,316,135 | + | -1.5 | |||
3,316,135 | + | +0.2 | |||
3,316,200 | - | Shewana3_2777 | 0.20 | -2.1 | |
3,316,324 | + | Shewana3_2777 | 0.39 | -0.1 | |
3,316,357 | + | Shewana3_2777 | 0.44 | +0.7 | |
3,316,517 | - | Shewana3_2777 | 0.69 | +0.4 | |
3,316,732 | + | +0.1 | |||
3,316,803 | + | +0.6 | |||
3,316,975 | + | Shewana3_2778 | 0.17 | -1.0 | |
3,317,037 | + | Shewana3_2778 | 0.23 | -0.4 | |
3,317,265 | + | Shewana3_2778 | 0.47 | -0.1 | |
3,317,307 | - | Shewana3_2778 | 0.51 | -0.1 | |
3,317,391 | + | Shewana3_2778 | 0.59 | -0.4 | |
3,317,400 | - | Shewana3_2778 | 0.60 | +0.3 | |
3,317,535 | - | Shewana3_2778 | 0.74 | -0.6 |
Or see this region's nucleotide sequence