Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2772 and Shewana3_2773 are separated by 69 nucleotides Shewana3_2773 and Shewana3_2774 are separated by 84 nucleotides Shewana3_2774 and Shewana3_2775 are separated by 84 nucleotides
Shewana3_2772: Shewana3_2772 - homoserine O-succinyltransferase (RefSeq), at 3,311,879 to 3,312,820
_2772
Shewana3_2773: Shewana3_2773 - hypothetical protein (RefSeq), at 3,312,890 to 3,313,324
_2773
Shewana3_2774: Shewana3_2774 - short chain dehydrogenase family protein (RefSeq), at 3,313,409 to 3,314,185
_2774
Shewana3_2775: Shewana3_2775 - outer membrane protein W (RefSeq), at 3,314,270 to 3,314,926
_2775
Position (kb)
3313
3314
3315 Strain fitness (log2 ratio)
-1
0
1 at 3312.419 kb on - strand, within Shewana3_2772 at 3313.031 kb on - strand, within Shewana3_2773 at 3313.033 kb on + strand, within Shewana3_2773 at 3313.033 kb on + strand, within Shewana3_2773 at 3313.137 kb on - strand, within Shewana3_2773 at 3313.192 kb on - strand, within Shewana3_2773 at 3313.241 kb on - strand, within Shewana3_2773 at 3313.264 kb on - strand, within Shewana3_2773 at 3313.306 kb on + strand at 3313.314 kb on - strand at 3313.321 kb on - strand at 3313.676 kb on + strand, within Shewana3_2774 at 3313.713 kb on + strand, within Shewana3_2774 at 3313.767 kb on + strand, within Shewana3_2774 at 3313.892 kb on - strand, within Shewana3_2774 at 3313.925 kb on - strand, within Shewana3_2774 at 3314.185 kb on + strand at 3314.277 kb on + strand at 3314.310 kb on - strand at 3314.447 kb on + strand, within Shewana3_2775 at 3314.447 kb on + strand, within Shewana3_2775 at 3314.465 kb on - strand, within Shewana3_2775 at 3314.600 kb on + strand, within Shewana3_2775 at 3314.600 kb on + strand, within Shewana3_2775 at 3314.659 kb on - strand, within Shewana3_2775 at 3315.074 kb on + strand at 3315.144 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 3,312,419 - Shewana3_2772 0.57 -0.4 3,313,031 - Shewana3_2773 0.32 -0.2 3,313,033 + Shewana3_2773 0.33 +0.7 3,313,033 + Shewana3_2773 0.33 +1.2 3,313,137 - Shewana3_2773 0.57 +0.9 3,313,192 - Shewana3_2773 0.69 +0.0 3,313,241 - Shewana3_2773 0.81 +1.4 3,313,264 - Shewana3_2773 0.86 +0.4 3,313,306 + -0.7 3,313,314 - -0.1 3,313,321 - -0.8 3,313,676 + Shewana3_2774 0.34 +0.9 3,313,713 + Shewana3_2774 0.39 +0.5 3,313,767 + Shewana3_2774 0.46 +0.4 3,313,892 - Shewana3_2774 0.62 -0.1 3,313,925 - Shewana3_2774 0.66 -0.5 3,314,185 + -0.0 3,314,277 + +1.2 3,314,310 - +0.3 3,314,447 + Shewana3_2775 0.27 +0.2 3,314,447 + Shewana3_2775 0.27 -0.1 3,314,465 - Shewana3_2775 0.30 +0.1 3,314,600 + Shewana3_2775 0.50 +0.6 3,314,600 + Shewana3_2775 0.50 +0.2 3,314,659 - Shewana3_2775 0.59 +0.3 3,315,074 + -0.7 3,315,144 + -0.4
Or see this region's nucleotide sequence