Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2746 and Shewana3_2747 are separated by 230 nucleotides Shewana3_2747 and Shewana3_2748 are separated by 238 nucleotides
Shewana3_2746: Shewana3_2746 - hypothetical protein (RefSeq), at 3,277,084 to 3,277,914
_2746
Shewana3_2747: Shewana3_2747 - acetyl-CoA hydrolase/transferase (RefSeq), at 3,278,145 to 3,279,431
_2747
Shewana3_2748: Shewana3_2748 - ABC-2 type transporter (RefSeq), at 3,279,670 to 3,280,791
_2748
Position (kb)
3278
3279
3280 Strain fitness (log2 ratio)
-1
0
1
2 at 3277.376 kb on + strand, within Shewana3_2746 at 3277.376 kb on + strand, within Shewana3_2746 at 3277.405 kb on - strand, within Shewana3_2746 at 3277.512 kb on - strand, within Shewana3_2746 at 3277.621 kb on - strand, within Shewana3_2746 at 3277.904 kb on - strand at 3277.904 kb on - strand at 3278.098 kb on - strand at 3278.129 kb on - strand at 3278.165 kb on + strand at 3278.212 kb on + strand at 3278.323 kb on - strand, within Shewana3_2747 at 3278.382 kb on + strand, within Shewana3_2747 at 3278.414 kb on - strand, within Shewana3_2747 at 3278.492 kb on - strand, within Shewana3_2747 at 3278.745 kb on + strand, within Shewana3_2747 at 3278.886 kb on + strand, within Shewana3_2747 at 3278.975 kb on - strand, within Shewana3_2747 at 3279.245 kb on + strand, within Shewana3_2747 at 3279.409 kb on + strand at 3279.552 kb on - strand at 3279.711 kb on + strand at 3279.793 kb on + strand, within Shewana3_2748 at 3279.903 kb on + strand, within Shewana3_2748 at 3280.119 kb on + strand, within Shewana3_2748 at 3280.119 kb on + strand, within Shewana3_2748 at 3280.127 kb on - strand, within Shewana3_2748 at 3280.127 kb on - strand, within Shewana3_2748 at 3280.150 kb on - strand, within Shewana3_2748 at 3280.181 kb on - strand, within Shewana3_2748 at 3280.224 kb on - strand, within Shewana3_2748 at 3280.272 kb on + strand, within Shewana3_2748 at 3280.304 kb on - strand, within Shewana3_2748 at 3280.368 kb on + strand, within Shewana3_2748
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 3,277,376 + Shewana3_2746 0.35 -0.8 3,277,376 + Shewana3_2746 0.35 +1.4 3,277,405 - Shewana3_2746 0.39 +1.6 3,277,512 - Shewana3_2746 0.52 -0.2 3,277,621 - Shewana3_2746 0.65 -0.3 3,277,904 - -1.7 3,277,904 - -0.5 3,278,098 - +2.2 3,278,129 - -0.3 3,278,165 + +0.2 3,278,212 + +0.9 3,278,323 - Shewana3_2747 0.14 -0.5 3,278,382 + Shewana3_2747 0.18 -1.1 3,278,414 - Shewana3_2747 0.21 -0.2 3,278,492 - Shewana3_2747 0.27 -0.1 3,278,745 + Shewana3_2747 0.47 -1.1 3,278,886 + Shewana3_2747 0.58 -0.6 3,278,975 - Shewana3_2747 0.64 -1.5 3,279,245 + Shewana3_2747 0.85 -1.4 3,279,409 + +0.6 3,279,552 - -0.6 3,279,711 + +2.2 3,279,793 + Shewana3_2748 0.11 -1.3 3,279,903 + Shewana3_2748 0.21 +1.0 3,280,119 + Shewana3_2748 0.40 +0.5 3,280,119 + Shewana3_2748 0.40 -0.1 3,280,127 - Shewana3_2748 0.41 +0.2 3,280,127 - Shewana3_2748 0.41 +1.9 3,280,150 - Shewana3_2748 0.43 -0.5 3,280,181 - Shewana3_2748 0.46 -0.1 3,280,224 - Shewana3_2748 0.49 -0.4 3,280,272 + Shewana3_2748 0.54 -1.4 3,280,304 - Shewana3_2748 0.57 +0.1 3,280,368 + Shewana3_2748 0.62 -0.1
Or see this region's nucleotide sequence