Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2723 and Shewana3_2724 are separated by 756 nucleotides Shewana3_2724 and Shewana3_2725 are separated by 151 nucleotides
Shewana3_2723: Shewana3_2723 - hypothetical protein (RefSeq), at 3,254,148 to 3,255,077
_2723
Shewana3_2724: Shewana3_2724 - GCN5-related N-acetyltransferase (RefSeq), at 3,255,834 to 3,256,268
_2724
Shewana3_2725: Shewana3_2725 - hypothetical protein (RefSeq), at 3,256,420 to 3,257,145
_2725
Position (kb)
3255
3256
3257 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3254.905 kb on + strand, within Shewana3_2723 at 3254.928 kb on + strand, within Shewana3_2723 at 3254.928 kb on + strand, within Shewana3_2723 at 3255.142 kb on + strand at 3255.169 kb on + strand at 3255.270 kb on + strand at 3255.841 kb on + strand at 3255.869 kb on + strand at 3255.974 kb on - strand, within Shewana3_2724 at 3256.011 kb on + strand, within Shewana3_2724 at 3256.128 kb on + strand, within Shewana3_2724 at 3256.255 kb on + strand at 3256.298 kb on - strand at 3256.327 kb on + strand at 3256.444 kb on + strand at 3256.618 kb on - strand, within Shewana3_2725 at 3256.634 kb on + strand, within Shewana3_2725 at 3256.653 kb on + strand, within Shewana3_2725 at 3256.731 kb on + strand, within Shewana3_2725 at 3256.739 kb on - strand, within Shewana3_2725 at 3256.765 kb on - strand, within Shewana3_2725 at 3256.825 kb on + strand, within Shewana3_2725 at 3256.911 kb on + strand, within Shewana3_2725 at 3256.929 kb on - strand, within Shewana3_2725 at 3256.982 kb on + strand, within Shewana3_2725 at 3256.982 kb on + strand, within Shewana3_2725 at 3256.982 kb on + strand, within Shewana3_2725 at 3256.990 kb on - strand, within Shewana3_2725 at 3256.990 kb on - strand, within Shewana3_2725 at 3257.046 kb on + strand, within Shewana3_2725 at 3257.110 kb on + strand at 3257.152 kb on + strand at 3257.152 kb on + strand at 3257.204 kb on + strand at 3257.204 kb on + strand at 3257.204 kb on + strand at 3257.205 kb on + strand at 3257.212 kb on - strand at 3257.240 kb on + strand at 3257.240 kb on + strand at 3257.248 kb on - strand at 3257.248 kb on - strand at 3257.248 kb on - strand at 3257.266 kb on + strand at 3257.268 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 3,254,905 + Shewana3_2723 0.81 -1.0 3,254,928 + Shewana3_2723 0.84 -3.6 3,254,928 + Shewana3_2723 0.84 -3.5 3,255,142 + -0.2 3,255,169 + -0.0 3,255,270 + +0.8 3,255,841 + -0.6 3,255,869 + -0.5 3,255,974 - Shewana3_2724 0.32 +0.2 3,256,011 + Shewana3_2724 0.41 -0.7 3,256,128 + Shewana3_2724 0.68 +0.0 3,256,255 + +0.1 3,256,298 - +2.2 3,256,327 + -0.7 3,256,444 + +0.3 3,256,618 - Shewana3_2725 0.27 -0.9 3,256,634 + Shewana3_2725 0.29 -1.6 3,256,653 + Shewana3_2725 0.32 -0.6 3,256,731 + Shewana3_2725 0.43 -1.1 3,256,739 - Shewana3_2725 0.44 +1.2 3,256,765 - Shewana3_2725 0.48 +2.2 3,256,825 + Shewana3_2725 0.56 -0.2 3,256,911 + Shewana3_2725 0.68 -1.4 3,256,929 - Shewana3_2725 0.70 +1.1 3,256,982 + Shewana3_2725 0.77 -2.3 3,256,982 + Shewana3_2725 0.77 -2.4 3,256,982 + Shewana3_2725 0.77 -1.1 3,256,990 - Shewana3_2725 0.79 +0.6 3,256,990 - Shewana3_2725 0.79 +1.2 3,257,046 + Shewana3_2725 0.86 -1.5 3,257,110 + -1.5 3,257,152 + +1.2 3,257,152 + +4.2 3,257,204 + +1.4 3,257,204 + -1.5 3,257,204 + +0.8 3,257,205 + -0.4 3,257,212 - +0.2 3,257,240 + +0.3 3,257,240 + -0.4 3,257,248 - -0.1 3,257,248 - -0.4 3,257,248 - -0.9 3,257,266 + -1.7 3,257,268 + +0.6
Or see this region's nucleotide sequence