Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2713
Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Rifampicin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,242,233 | - | Shewana3_2712 | 0.72 | -2.1 | |
3,242,281 | + | Shewana3_2712 | 0.76 | -1.6 | |
3,242,281 | + | Shewana3_2712 | 0.76 | +0.2 | |
3,242,371 | + | Shewana3_2712 | 0.83 | +2.2 | |
3,242,961 | + | Shewana3_2713 | 0.17 | -0.8 | |
3,243,089 | - | Shewana3_2713 | 0.24 | -1.4 | |
3,243,167 | - | Shewana3_2713 | 0.28 | -2.4 | |
3,243,236 | + | Shewana3_2713 | 0.32 | -3.0 | |
3,243,263 | - | Shewana3_2713 | 0.33 | -0.0 | |
3,243,534 | - | Shewana3_2713 | 0.48 | +0.7 | |
3,243,839 | + | Shewana3_2713 | 0.65 | -0.1 | |
3,244,431 | - | +0.7 | |||
3,244,510 | + | -1.5 | |||
3,244,576 | + | Shewana3_2714 | 0.10 | +2.2 | |
3,244,584 | - | Shewana3_2714 | 0.11 | -1.1 | |
3,244,978 | - | Shewana3_2714 | 0.52 | -1.5 | |
3,244,983 | - | Shewana3_2714 | 0.52 | -1.6 | |
3,245,028 | - | Shewana3_2714 | 0.57 | +0.8 | |
3,245,091 | - | Shewana3_2714 | 0.64 | -0.6 | |
3,245,132 | - | Shewana3_2714 | 0.68 | +0.2 | |
3,245,174 | - | Shewana3_2714 | 0.72 | +0.3 | |
3,245,206 | - | Shewana3_2714 | 0.75 | -0.1 | |
3,245,367 | - | +0.7 |
Or see this region's nucleotide sequence