Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2689 and Shewana3_2690 are separated by 142 nucleotides Shewana3_2690 and Shewana3_2691 are separated by 13 nucleotides Shewana3_2691 and Shewana3_2692 are separated by 106 nucleotides Shewana3_2692 and Shewana3_2693 are separated by 169 nucleotides
Shewana3_2689: Shewana3_2689 - hypothetical protein (RefSeq), at 3,216,571 to 3,216,978
_2689
Shewana3_2690: Shewana3_2690 - short chain dehydrogenase (RefSeq), at 3,217,121 to 3,217,888
_2690
Shewana3_2691: Shewana3_2691 - DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada (RefSeq), at 3,217,902 to 3,218,795
_2691
Shewana3_2692: Shewana3_2692 - streptogramin A acetyl transferase (RefSeq), at 3,218,902 to 3,219,576
_2692
Shewana3_2693: Shewana3_2693 - AraC family transcriptional regulator (RefSeq), at 3,219,746 to 3,220,582
_2693
Position (kb)
3217
3218
3219 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3216.973 kb on + strand at 3216.973 kb on + strand at 3216.988 kb on + strand at 3217.057 kb on + strand at 3217.183 kb on - strand at 3217.275 kb on - strand, within Shewana3_2690 at 3217.321 kb on + strand, within Shewana3_2690 at 3217.328 kb on - strand, within Shewana3_2690 at 3217.573 kb on - strand, within Shewana3_2690 at 3217.659 kb on + strand, within Shewana3_2690 at 3217.876 kb on + strand at 3218.085 kb on - strand, within Shewana3_2691 at 3218.140 kb on + strand, within Shewana3_2691 at 3218.148 kb on - strand, within Shewana3_2691 at 3218.153 kb on - strand, within Shewana3_2691 at 3218.184 kb on - strand, within Shewana3_2691 at 3218.222 kb on + strand, within Shewana3_2691 at 3218.363 kb on + strand, within Shewana3_2691 at 3218.478 kb on + strand, within Shewana3_2691 at 3218.509 kb on - strand, within Shewana3_2691 at 3218.527 kb on + strand, within Shewana3_2691 at 3218.535 kb on - strand, within Shewana3_2691 at 3218.535 kb on - strand, within Shewana3_2691 at 3218.535 kb on - strand, within Shewana3_2691 at 3218.535 kb on - strand, within Shewana3_2691 at 3218.673 kb on - strand, within Shewana3_2691 at 3218.788 kb on - strand at 3218.822 kb on - strand at 3218.864 kb on + strand at 3218.930 kb on + strand at 3219.041 kb on + strand, within Shewana3_2692 at 3219.175 kb on + strand, within Shewana3_2692 at 3219.183 kb on - strand, within Shewana3_2692 at 3219.286 kb on - strand, within Shewana3_2692 at 3219.303 kb on - strand, within Shewana3_2692 at 3219.320 kb on + strand, within Shewana3_2692 at 3219.598 kb on + strand at 3219.785 kb on - strand at 3219.792 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 3,216,973 + -0.7 3,216,973 + +0.0 3,216,988 + +0.0 3,217,057 + +0.0 3,217,183 - -0.1 3,217,275 - Shewana3_2690 0.20 -0.1 3,217,321 + Shewana3_2690 0.26 +0.3 3,217,328 - Shewana3_2690 0.27 -1.5 3,217,573 - Shewana3_2690 0.59 +0.3 3,217,659 + Shewana3_2690 0.70 +0.1 3,217,876 + +0.3 3,218,085 - Shewana3_2691 0.20 -0.5 3,218,140 + Shewana3_2691 0.27 -2.0 3,218,148 - Shewana3_2691 0.28 +0.5 3,218,153 - Shewana3_2691 0.28 -1.2 3,218,184 - Shewana3_2691 0.32 +2.3 3,218,222 + Shewana3_2691 0.36 -0.5 3,218,363 + Shewana3_2691 0.52 -0.3 3,218,478 + Shewana3_2691 0.64 +0.5 3,218,509 - Shewana3_2691 0.68 -1.2 3,218,527 + Shewana3_2691 0.70 +0.0 3,218,535 - Shewana3_2691 0.71 +0.2 3,218,535 - Shewana3_2691 0.71 -1.3 3,218,535 - Shewana3_2691 0.71 +0.1 3,218,535 - Shewana3_2691 0.71 -2.7 3,218,673 - Shewana3_2691 0.86 -0.1 3,218,788 - -0.4 3,218,822 - +0.0 3,218,864 + +0.1 3,218,930 + -0.1 3,219,041 + Shewana3_2692 0.21 -2.8 3,219,175 + Shewana3_2692 0.40 +0.3 3,219,183 - Shewana3_2692 0.42 +0.3 3,219,286 - Shewana3_2692 0.57 +0.7 3,219,303 - Shewana3_2692 0.59 -0.2 3,219,320 + Shewana3_2692 0.62 -0.5 3,219,598 + -0.8 3,219,785 - +0.8 3,219,792 + -0.8
Or see this region's nucleotide sequence