Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2631 and Shewana3_2632 overlap by 10 nucleotides Shewana3_2632 and Shewana3_2633 are separated by 9 nucleotides Shewana3_2633 and Shewana3_2634 are separated by 5 nucleotides Shewana3_2634 and Shewana3_2635 are separated by 33 nucleotides
Shewana3_2631: Shewana3_2631 - hypothetical protein (RefSeq), at 3,140,957 to 3,141,730
_2631
Shewana3_2632: Shewana3_2632 - primosomal replication protein N'', putative (RefSeq), at 3,141,721 to 3,142,389
_2632
Shewana3_2633: Shewana3_2633 - hypothetical protein (RefSeq), at 3,142,399 to 3,143,091
_2633
Shewana3_2634: Shewana3_2634 - histone deacetylase superfamily protein (RefSeq), at 3,143,097 to 3,143,999
_2634
Shewana3_2635: Shewana3_2635 - hypothetical protein (RefSeq), at 3,144,033 to 3,144,320
_2635
Position (kb)
3142
3143
3144 Strain fitness (log2 ratio)
-1
0
1
2 at 3141.434 kb on + strand, within Shewana3_2631 at 3141.503 kb on - strand, within Shewana3_2631 at 3142.100 kb on - strand, within Shewana3_2632 at 3142.455 kb on - strand at 3142.465 kb on + strand at 3142.712 kb on - strand, within Shewana3_2633 at 3142.730 kb on - strand, within Shewana3_2633 at 3142.758 kb on + strand, within Shewana3_2633 at 3142.761 kb on - strand, within Shewana3_2633 at 3142.761 kb on - strand, within Shewana3_2633 at 3142.776 kb on - strand, within Shewana3_2633 at 3142.861 kb on + strand, within Shewana3_2633 at 3142.871 kb on - strand, within Shewana3_2633 at 3142.931 kb on + strand, within Shewana3_2633 at 3142.983 kb on + strand, within Shewana3_2633 at 3142.983 kb on + strand, within Shewana3_2633 at 3142.991 kb on - strand, within Shewana3_2633 at 3143.098 kb on - strand at 3143.151 kb on - strand at 3143.330 kb on - strand, within Shewana3_2634 at 3143.438 kb on - strand, within Shewana3_2634 at 3143.596 kb on + strand, within Shewana3_2634 at 3143.610 kb on + strand, within Shewana3_2634 at 3143.938 kb on - strand at 3143.994 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 3,141,434 + Shewana3_2631 0.62 -1.3 3,141,503 - Shewana3_2631 0.71 +0.7 3,142,100 - Shewana3_2632 0.57 -0.8 3,142,455 - +1.2 3,142,465 + +0.2 3,142,712 - Shewana3_2633 0.45 -0.1 3,142,730 - Shewana3_2633 0.48 +2.2 3,142,758 + Shewana3_2633 0.52 -0.4 3,142,761 - Shewana3_2633 0.52 +0.7 3,142,761 - Shewana3_2633 0.52 +0.7 3,142,776 - Shewana3_2633 0.54 +0.7 3,142,861 + Shewana3_2633 0.67 +0.7 3,142,871 - Shewana3_2633 0.68 +1.2 3,142,931 + Shewana3_2633 0.77 +1.1 3,142,983 + Shewana3_2633 0.84 -0.3 3,142,983 + Shewana3_2633 0.84 +0.1 3,142,991 - Shewana3_2633 0.85 +1.2 3,143,098 - -0.3 3,143,151 - +0.7 3,143,330 - Shewana3_2634 0.26 +0.0 3,143,438 - Shewana3_2634 0.38 -0.3 3,143,596 + Shewana3_2634 0.55 +2.2 3,143,610 + Shewana3_2634 0.57 -0.6 3,143,938 - +2.2 3,143,994 - +1.0
Or see this region's nucleotide sequence