Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2633

Experiment: Rifampicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2631 and Shewana3_2632 overlap by 10 nucleotidesShewana3_2632 and Shewana3_2633 are separated by 9 nucleotidesShewana3_2633 and Shewana3_2634 are separated by 5 nucleotidesShewana3_2634 and Shewana3_2635 are separated by 33 nucleotides Shewana3_2631: Shewana3_2631 - hypothetical protein (RefSeq), at 3,140,957 to 3,141,730 _2631 Shewana3_2632: Shewana3_2632 - primosomal replication protein N'', putative (RefSeq), at 3,141,721 to 3,142,389 _2632 Shewana3_2633: Shewana3_2633 - hypothetical protein (RefSeq), at 3,142,399 to 3,143,091 _2633 Shewana3_2634: Shewana3_2634 - histone deacetylase superfamily protein (RefSeq), at 3,143,097 to 3,143,999 _2634 Shewana3_2635: Shewana3_2635 - hypothetical protein (RefSeq), at 3,144,033 to 3,144,320 _2635 Position (kb) 3142 3143 3144Strain fitness (log2 ratio) -1 0 1 2at 3141.434 kb on + strand, within Shewana3_2631at 3141.503 kb on - strand, within Shewana3_2631at 3142.100 kb on - strand, within Shewana3_2632at 3142.455 kb on - strandat 3142.465 kb on + strandat 3142.712 kb on - strand, within Shewana3_2633at 3142.730 kb on - strand, within Shewana3_2633at 3142.758 kb on + strand, within Shewana3_2633at 3142.761 kb on - strand, within Shewana3_2633at 3142.761 kb on - strand, within Shewana3_2633at 3142.776 kb on - strand, within Shewana3_2633at 3142.861 kb on + strand, within Shewana3_2633at 3142.871 kb on - strand, within Shewana3_2633at 3142.931 kb on + strand, within Shewana3_2633at 3142.983 kb on + strand, within Shewana3_2633at 3142.983 kb on + strand, within Shewana3_2633at 3142.991 kb on - strand, within Shewana3_2633at 3143.098 kb on - strandat 3143.151 kb on - strandat 3143.330 kb on - strand, within Shewana3_2634at 3143.438 kb on - strand, within Shewana3_2634at 3143.596 kb on + strand, within Shewana3_2634at 3143.610 kb on + strand, within Shewana3_2634at 3143.938 kb on - strandat 3143.994 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml
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3,141,434 + Shewana3_2631 0.62 -1.3
3,141,503 - Shewana3_2631 0.71 +0.7
3,142,100 - Shewana3_2632 0.57 -0.8
3,142,455 - +1.2
3,142,465 + +0.2
3,142,712 - Shewana3_2633 0.45 -0.1
3,142,730 - Shewana3_2633 0.48 +2.2
3,142,758 + Shewana3_2633 0.52 -0.4
3,142,761 - Shewana3_2633 0.52 +0.7
3,142,761 - Shewana3_2633 0.52 +0.7
3,142,776 - Shewana3_2633 0.54 +0.7
3,142,861 + Shewana3_2633 0.67 +0.7
3,142,871 - Shewana3_2633 0.68 +1.2
3,142,931 + Shewana3_2633 0.77 +1.1
3,142,983 + Shewana3_2633 0.84 -0.3
3,142,983 + Shewana3_2633 0.84 +0.1
3,142,991 - Shewana3_2633 0.85 +1.2
3,143,098 - -0.3
3,143,151 - +0.7
3,143,330 - Shewana3_2634 0.26 +0.0
3,143,438 - Shewana3_2634 0.38 -0.3
3,143,596 + Shewana3_2634 0.55 +2.2
3,143,610 + Shewana3_2634 0.57 -0.6
3,143,938 - +2.2
3,143,994 - +1.0

Or see this region's nucleotide sequence