Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2619 and Shewana3_2620 are separated by 80 nucleotides Shewana3_2620 and Shewana3_2621 are separated by 51 nucleotides Shewana3_2621 and Shewana3_2622 are separated by 2 nucleotides Shewana3_2622 and Shewana3_2623 are separated by 1 nucleotides
Shewana3_2619: Shewana3_2619 - hypothetical protein (RefSeq), at 3,123,759 to 3,125,594
_2619
Shewana3_2620: Shewana3_2620 - diguanylate cyclase (RefSeq), at 3,125,675 to 3,126,184
_2620
Shewana3_2621: Shewana3_2621 - TPR repeat-containing protein (RefSeq), at 3,126,236 to 3,127,483
_2621
Shewana3_2622: Shewana3_2622 - TonB family protein (RefSeq), at 3,127,486 to 3,128,109
_2622
Shewana3_2623: Shewana3_2623 - biopolymer transport protein ExbD/TolR (RefSeq), at 3,128,111 to 3,128,515
_2623
Position (kb) 3126
3127
3128 Strain fitness (log2 ratio) -1
0
1 at 3125.249 kb on - strand, within Shewana3_2619 at 3125.318 kb on + strand, within Shewana3_2619 at 3125.430 kb on + strand at 3125.699 kb on + strand at 3125.893 kb on - strand, within Shewana3_2620 at 3125.964 kb on + strand, within Shewana3_2620
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 3,125,249 - Shewana3_2619 0.81 +0.3 3,125,318 + Shewana3_2619 0.85 +0.2 3,125,430 + +1.2 3,125,699 + +0.1 3,125,893 - Shewana3_2620 0.43 -1.3 3,125,964 + Shewana3_2620 0.57 -0.3
Or see this region's nucleotide sequence