Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2620

Experiment: Rifampicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2619 and Shewana3_2620 are separated by 80 nucleotidesShewana3_2620 and Shewana3_2621 are separated by 51 nucleotides Shewana3_2619: Shewana3_2619 - hypothetical protein (RefSeq), at 3,123,759 to 3,125,594 _2619 Shewana3_2620: Shewana3_2620 - diguanylate cyclase (RefSeq), at 3,125,675 to 3,126,184 _2620 Shewana3_2621: Shewana3_2621 - TPR repeat-containing protein (RefSeq), at 3,126,236 to 3,127,483 _2621 Position (kb) 3125 3126 3127Strain fitness (log2 ratio) -1 0 1 2at 3124.960 kb on - strand, within Shewana3_2619at 3125.074 kb on - strand, within Shewana3_2619at 3125.092 kb on + strand, within Shewana3_2619at 3125.218 kb on + strand, within Shewana3_2619at 3125.249 kb on - strand, within Shewana3_2619at 3125.318 kb on + strand, within Shewana3_2619at 3125.430 kb on + strandat 3125.699 kb on + strandat 3125.893 kb on - strand, within Shewana3_2620at 3125.964 kb on + strand, within Shewana3_2620

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml
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3,124,960 - Shewana3_2619 0.65 -0.8
3,125,074 - Shewana3_2619 0.72 +0.6
3,125,092 + Shewana3_2619 0.73 -0.6
3,125,218 + Shewana3_2619 0.79 +2.2
3,125,249 - Shewana3_2619 0.81 +0.3
3,125,318 + Shewana3_2619 0.85 +0.2
3,125,430 + +1.2
3,125,699 + +0.1
3,125,893 - Shewana3_2620 0.43 -1.3
3,125,964 + Shewana3_2620 0.57 -0.3

Or see this region's nucleotide sequence