Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2585 and Shewana3_2586 are separated by 32 nucleotides Shewana3_2586 and Shewana3_2587 are separated by 406 nucleotides Shewana3_2587 and Shewana3_2588 are separated by 149 nucleotides Shewana3_2588 and Shewana3_2589 are separated by 151 nucleotides
Shewana3_2585: Shewana3_2585 - DNA internalization-related competence protein ComEC/Rec2 (RefSeq), at 3,089,277 to 3,091,598
_2585
Shewana3_2586: Shewana3_2586 - hypothetical protein (RefSeq), at 3,091,631 to 3,092,140
_2586
Shewana3_2587: Shewana3_2587 - NnrS family protein (RefSeq), at 3,092,547 to 3,093,719
_2587
Shewana3_2588: Shewana3_2588 - phosphate-starvation-inducible E (RefSeq), at 3,093,869 to 3,094,273
_2588
Shewana3_2589: Shewana3_2589 - type IV pilus assembly PilZ (RefSeq), at 3,094,425 to 3,094,727
_2589
Position (kb)
3092
3093
3094 Strain fitness (log2 ratio)
-1
0
1
2 at 3092.160 kb on + strand at 3092.186 kb on - strand at 3092.204 kb on + strand at 3092.325 kb on + strand at 3092.797 kb on - strand, within Shewana3_2587 at 3092.891 kb on + strand, within Shewana3_2587 at 3093.127 kb on + strand, within Shewana3_2587 at 3093.227 kb on - strand, within Shewana3_2587 at 3093.615 kb on + strand at 3093.676 kb on + strand at 3094.124 kb on - strand, within Shewana3_2588 at 3094.300 kb on + strand at 3094.323 kb on - strand at 3094.497 kb on + strand, within Shewana3_2589 at 3094.505 kb on - strand, within Shewana3_2589 at 3094.530 kb on - strand, within Shewana3_2589 at 3094.686 kb on - strand, within Shewana3_2589 at 3094.686 kb on - strand, within Shewana3_2589
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 3,092,160 + -0.8 3,092,186 - +1.2 3,092,204 + -0.3 3,092,325 + +2.2 3,092,797 - Shewana3_2587 0.21 -0.3 3,092,891 + Shewana3_2587 0.29 -0.8 3,093,127 + Shewana3_2587 0.49 +0.0 3,093,227 - Shewana3_2587 0.58 -0.8 3,093,615 + +0.3 3,093,676 + +0.2 3,094,124 - Shewana3_2588 0.63 -0.6 3,094,300 + -0.1 3,094,323 - +0.9 3,094,497 + Shewana3_2589 0.24 +1.2 3,094,505 - Shewana3_2589 0.26 -0.4 3,094,530 - Shewana3_2589 0.35 +1.2 3,094,686 - Shewana3_2589 0.86 +2.2 3,094,686 - Shewana3_2589 0.86 -0.7
Or see this region's nucleotide sequence