Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2551
Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Rifampicin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,049,980 | - | Shewana3_2550 | 0.55 | +1.8 | |
3,050,972 | + | Shewana3_2551 | 0.12 | -0.1 | |
3,050,987 | - | Shewana3_2551 | 0.13 | -0.4 | |
3,051,260 | + | Shewana3_2551 | 0.25 | +0.1 | |
3,051,268 | - | Shewana3_2551 | 0.25 | +0.4 | |
3,051,449 | - | Shewana3_2551 | 0.33 | -0.3 | |
3,051,649 | - | Shewana3_2551 | 0.42 | +2.2 | |
3,051,732 | - | Shewana3_2551 | 0.46 | -0.0 | |
3,051,828 | - | Shewana3_2551 | 0.51 | +0.6 | |
3,052,106 | - | Shewana3_2551 | 0.63 | -1.1 | |
3,052,267 | - | Shewana3_2551 | 0.70 | -2.3 | |
3,052,448 | + | Shewana3_2551 | 0.79 | +0.2 | |
3,053,287 | + | -0.6 | |||
3,053,295 | - | -0.6 | |||
3,053,305 | - | +0.2 | |||
3,053,415 | - | Shewana3_2552 | 0.11 | +0.8 | |
3,053,891 | + | Shewana3_2552 | 0.38 | -0.9 |
Or see this region's nucleotide sequence