Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2551

Experiment: Rifampicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2550 and Shewana3_2551 are separated by 275 nucleotidesShewana3_2551 and Shewana3_2552 are separated by 294 nucleotides Shewana3_2550: Shewana3_2550 - patatin (RefSeq), at 3,049,424 to 3,050,431 _2550 Shewana3_2551: Shewana3_2551 - TonB-dependent siderophore receptor (RefSeq), at 3,050,707 to 3,052,923 _2551 Shewana3_2552: Shewana3_2552 - acyl-CoA dehydrogenase domain-containing protein (RefSeq), at 3,053,218 to 3,055,008 _2552 Position (kb) 3050 3051 3052 3053Strain fitness (log2 ratio) -2 -1 0 1 2at 3049.980 kb on - strand, within Shewana3_2550at 3050.972 kb on + strand, within Shewana3_2551at 3050.987 kb on - strand, within Shewana3_2551at 3051.260 kb on + strand, within Shewana3_2551at 3051.268 kb on - strand, within Shewana3_2551at 3051.449 kb on - strand, within Shewana3_2551at 3051.649 kb on - strand, within Shewana3_2551at 3051.732 kb on - strand, within Shewana3_2551at 3051.828 kb on - strand, within Shewana3_2551at 3052.106 kb on - strand, within Shewana3_2551at 3052.267 kb on - strand, within Shewana3_2551at 3052.448 kb on + strand, within Shewana3_2551at 3053.287 kb on + strandat 3053.295 kb on - strandat 3053.305 kb on - strandat 3053.415 kb on - strand, within Shewana3_2552at 3053.891 kb on + strand, within Shewana3_2552

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml
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3,049,980 - Shewana3_2550 0.55 +1.8
3,050,972 + Shewana3_2551 0.12 -0.1
3,050,987 - Shewana3_2551 0.13 -0.4
3,051,260 + Shewana3_2551 0.25 +0.1
3,051,268 - Shewana3_2551 0.25 +0.4
3,051,449 - Shewana3_2551 0.33 -0.3
3,051,649 - Shewana3_2551 0.42 +2.2
3,051,732 - Shewana3_2551 0.46 -0.0
3,051,828 - Shewana3_2551 0.51 +0.6
3,052,106 - Shewana3_2551 0.63 -1.1
3,052,267 - Shewana3_2551 0.70 -2.3
3,052,448 + Shewana3_2551 0.79 +0.2
3,053,287 + -0.6
3,053,295 - -0.6
3,053,305 - +0.2
3,053,415 - Shewana3_2552 0.11 +0.8
3,053,891 + Shewana3_2552 0.38 -0.9

Or see this region's nucleotide sequence