Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2524 and grxA are separated by 60 nucleotides grxA and Shewana3_2526 are separated by 58 nucleotides Shewana3_2526 and Shewana3_R0104 are separated by 167 nucleotides Shewana3_R0104 and Shewana3_R0105 are separated by 160 nucleotides Shewana3_R0105 and Shewana3_R0106 are separated by 160 nucleotides Shewana3_R0106 and Shewana3_R0107 are separated by 35 nucleotides Shewana3_R0107 and Shewana3_R0108 are separated by 36 nucleotides Shewana3_R0108 and Shewana3_R0109 are separated by 35 nucleotides
Shewana3_2524: Shewana3_2524 - type III restriction enzyme, res subunit (RefSeq), at 3,021,537 to 3,023,309
_2524
Shewana3_2525: grxA - glutaredoxin 1 (RefSeq), at 3,023,370 to 3,023,630
grxA
Shewana3_2526: Shewana3_2526 - hypothetical protein (RefSeq), at 3,023,689 to 3,024,852
_2526
Shewana3_R0104: Shewana3_R0104 - tRNA-Lys (RefSeq), at 3,025,020 to 3,025,095
_R0104
Shewana3_R0105: Shewana3_R0105 - tRNA-Lys (RefSeq), at 3,025,256 to 3,025,331
_R0105
Shewana3_R0106: Shewana3_R0106 - tRNA-Lys (RefSeq), at 3,025,492 to 3,025,567
_R0106
Shewana3_R0107: Shewana3_R0107 - tRNA-Lys (RefSeq), at 3,025,603 to 3,025,678
_R0107
Shewana3_R0108: Shewana3_R0108 - tRNA-Lys (RefSeq), at 3,025,715 to 3,025,790
_R0108
Shewana3_R0109: Shewana3_R0109 - tRNA-Lys (RefSeq), at 3,025,826 to 3,025,901
_R0109
Position (kb)
3023
3024
3025 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3022.864 kb on - strand, within Shewana3_2524 at 3022.878 kb on + strand, within Shewana3_2524 at 3023.198 kb on - strand at 3023.335 kb on - strand at 3023.755 kb on + strand at 3023.775 kb on - strand at 3023.855 kb on - strand, within Shewana3_2526 at 3023.893 kb on + strand, within Shewana3_2526 at 3023.895 kb on + strand, within Shewana3_2526 at 3024.256 kb on + strand, within Shewana3_2526 at 3024.690 kb on - strand, within Shewana3_2526
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 3,022,864 - Shewana3_2524 0.75 +2.2 3,022,878 + Shewana3_2524 0.76 +3.2 3,023,198 - +2.2 3,023,335 - +2.2 3,023,755 + +1.5 3,023,775 - +0.1 3,023,855 - Shewana3_2526 0.14 +0.6 3,023,893 + Shewana3_2526 0.18 +2.2 3,023,895 + Shewana3_2526 0.18 +2.2 3,024,256 + Shewana3_2526 0.49 -0.1 3,024,690 - Shewana3_2526 0.86 +2.2
Or see this region's nucleotide sequence