Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2490
Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Rifampicin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,978,861 | + | Shewana3_2489 | 0.55 | -1.5 | |
2,978,862 | - | Shewana3_2489 | 0.55 | +2.2 | |
2,978,869 | - | Shewana3_2489 | 0.55 | -0.3 | |
2,978,878 | + | Shewana3_2489 | 0.56 | +0.2 | |
2,978,933 | + | Shewana3_2489 | 0.59 | +0.2 | |
2,978,989 | - | Shewana3_2489 | 0.62 | +0.2 | |
2,979,094 | + | Shewana3_2489 | 0.68 | +1.2 | |
2,979,101 | - | Shewana3_2489 | 0.68 | +1.0 | |
2,979,287 | - | Shewana3_2489 | 0.79 | -1.0 | |
2,979,362 | - | Shewana3_2489 | 0.83 | +1.2 | |
2,979,454 | - | Shewana3_2489 | 0.88 | +0.2 | |
2,979,570 | - | -0.6 | |||
2,979,693 | - | -1.3 | |||
2,979,737 | - | -1.1 | |||
2,979,785 | + | +2.2 | |||
2,979,788 | + | +2.2 | |||
2,979,930 | - | Shewana3_2490 | 0.46 | +0.9 | |
2,980,086 | - | -0.1 | |||
2,980,379 | - | +0.3 | |||
2,980,584 | - | +0.5 | |||
2,980,599 | + | +0.3 | |||
2,980,599 | + | -0.1 | |||
2,980,599 | + | -0.6 | |||
2,980,695 | - | -0.2 | |||
2,980,764 | + | +0.1 | |||
2,980,774 | + | -0.2 | |||
2,980,782 | - | -0.2 | |||
2,980,858 | + | Shewana3_2491 | 0.11 | -1.1 | |
2,980,858 | + | Shewana3_2491 | 0.11 | -0.1 | |
2,980,907 | - | Shewana3_2491 | 0.14 | +2.2 | |
2,981,013 | + | Shewana3_2491 | 0.21 | +1.1 |
Or see this region's nucleotide sequence