Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2400
Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Rifampicin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,877,833 | + | +1.9 | |||
2,877,963 | + | +2.3 | |||
2,878,143 | - | Shewana3_2399 | 0.22 | +1.0 | |
2,878,182 | - | Shewana3_2399 | 0.29 | +0.7 | |
2,878,348 | + | Shewana3_2399 | 0.61 | +0.0 | |
2,878,356 | - | Shewana3_2399 | 0.63 | -1.0 | |
2,878,484 | - | Shewana3_2399 | 0.88 | +1.0 | |
2,878,578 | - | -1.0 | |||
2,878,643 | - | +0.3 | |||
2,879,019 | - | Shewana3_2400 | 0.44 | -0.8 | |
2,879,157 | - | Shewana3_2400 | 0.58 | +0.3 | |
2,879,340 | + | Shewana3_2400 | 0.75 | -0.5 | |
2,879,452 | + | Shewana3_2400 | 0.86 | +0.3 | |
2,879,470 | + | Shewana3_2400 | 0.88 | -0.5 | |
2,880,003 | - | Shewana3_2401 | 0.34 | +0.3 | |
2,880,026 | - | Shewana3_2401 | 0.37 | -0.8 | |
2,880,034 | + | Shewana3_2401 | 0.37 | +1.4 | |
2,880,042 | - | Shewana3_2401 | 0.38 | -0.1 | |
2,880,189 | - | Shewana3_2401 | 0.54 | -1.2 | |
2,880,355 | - | Shewana3_2401 | 0.72 | -0.6 |
Or see this region's nucleotide sequence