Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2387

Experiment: Rifampicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2386 and Shewana3_2387 are separated by 199 nucleotidesShewana3_2387 and Shewana3_2388 are separated by 21 nucleotidesShewana3_2388 and Shewana3_2389 are separated by 130 nucleotides Shewana3_2386: Shewana3_2386 - long-chain-fatty-acid--CoA ligase (RefSeq), at 2,864,912 to 2,866,585 _2386 Shewana3_2387: Shewana3_2387 - alpha/beta hydrolase fold (RefSeq), at 2,866,785 to 2,867,651 _2387 Shewana3_2388: Shewana3_2388 - hypothetical protein (RefSeq), at 2,867,673 to 2,868,485 _2388 Shewana3_2389: Shewana3_2389 - hypothetical protein (RefSeq), at 2,868,616 to 2,869,323 _2389 Position (kb) 2866 2867 2868Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 2865.875 kb on - strand, within Shewana3_2386at 2866.198 kb on - strand, within Shewana3_2386at 2866.268 kb on - strand, within Shewana3_2386at 2866.849 kb on - strandat 2866.865 kb on + strandat 2866.873 kb on - strand, within Shewana3_2387at 2867.309 kb on - strand, within Shewana3_2387at 2867.604 kb on + strandat 2867.617 kb on - strandat 2867.751 kb on + strandat 2867.833 kb on - strand, within Shewana3_2388at 2868.222 kb on + strand, within Shewana3_2388at 2868.400 kb on + strand, within Shewana3_2388at 2868.426 kb on + strandat 2868.434 kb on - strandat 2868.434 kb on - strandat 2868.434 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml
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2,865,875 - Shewana3_2386 0.58 -0.5
2,866,198 - Shewana3_2386 0.77 +6.0
2,866,268 - Shewana3_2386 0.81 +0.3
2,866,849 - -1.0
2,866,865 + +0.8
2,866,873 - Shewana3_2387 0.10 +0.8
2,867,309 - Shewana3_2387 0.60 -0.2
2,867,604 + -0.1
2,867,617 - +1.3
2,867,751 + -1.0
2,867,833 - Shewana3_2388 0.20 +1.1
2,868,222 + Shewana3_2388 0.68 -1.4
2,868,400 + Shewana3_2388 0.89 +1.3
2,868,426 + +1.3
2,868,434 - -0.7
2,868,434 - -1.4
2,868,434 - +0.2

Or see this region's nucleotide sequence