Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2297 and Shewana3_2298 are separated by 101 nucleotides Shewana3_2298 and Shewana3_2299 are separated by 112 nucleotides Shewana3_2299 and Shewana3_2300 are separated by 55 nucleotides Shewana3_2300 and Shewana3_2301 are separated by 137 nucleotides
Shewana3_2297: Shewana3_2297 - ISPsy11, transposase OrfA (RefSeq), at 2,761,088 to 2,761,480
_2297
Shewana3_2298: Shewana3_2298 - integrase catalytic subunit (RefSeq), at 2,761,582 to 2,762,304
_2298
Shewana3_2299: Shewana3_2299 - hypothetical protein (RefSeq), at 2,762,417 to 2,763,352
_2299
Shewana3_2300: Shewana3_2300 - GCN5-related N-acetyltransferase (RefSeq), at 2,763,408 to 2,763,866
_2300
Shewana3_2301: Shewana3_2301 - peptidase S9 prolyl oligopeptidase (RefSeq), at 2,764,004 to 2,766,067
_2301
Position (kb)
2762
2763
2764 Strain fitness (log2 ratio)
-1
0
1
2 at 2762.440 kb on + strand at 2762.553 kb on - strand, within Shewana3_2299 at 2762.667 kb on - strand, within Shewana3_2299 at 2762.782 kb on - strand, within Shewana3_2299 at 2762.856 kb on + strand, within Shewana3_2299 at 2762.885 kb on + strand, within Shewana3_2299 at 2763.599 kb on - strand, within Shewana3_2300 at 2763.637 kb on + strand, within Shewana3_2300 at 2763.645 kb on - strand, within Shewana3_2300 at 2763.705 kb on + strand, within Shewana3_2300 at 2763.713 kb on - strand, within Shewana3_2300 at 2763.770 kb on + strand, within Shewana3_2300 at 2763.773 kb on - strand, within Shewana3_2300 at 2763.780 kb on + strand, within Shewana3_2300 at 2763.783 kb on - strand, within Shewana3_2300 at 2763.807 kb on - strand, within Shewana3_2300
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 2,762,440 + -1.5 2,762,553 - Shewana3_2299 0.15 -0.4 2,762,667 - Shewana3_2299 0.27 -0.8 2,762,782 - Shewana3_2299 0.39 +0.5 2,762,856 + Shewana3_2299 0.47 +2.5 2,762,885 + Shewana3_2299 0.50 +2.5 2,763,599 - Shewana3_2300 0.42 -0.2 2,763,637 + Shewana3_2300 0.50 +0.1 2,763,645 - Shewana3_2300 0.52 -0.2 2,763,705 + Shewana3_2300 0.65 -0.4 2,763,713 - Shewana3_2300 0.66 +0.3 2,763,770 + Shewana3_2300 0.79 -0.1 2,763,773 - Shewana3_2300 0.80 -0.9 2,763,780 + Shewana3_2300 0.81 +0.6 2,763,783 - Shewana3_2300 0.82 -0.0 2,763,807 - Shewana3_2300 0.87 +2.0
Or see this region's nucleotide sequence