Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2266 and Shewana3_2267 are separated by 132 nucleotides Shewana3_2267 and Shewana3_2268 are separated by 481 nucleotides
Shewana3_2266: Shewana3_2266 - GntR family transcriptional regulator (RefSeq), at 2,727,488 to 2,728,870
_2266
Shewana3_2267: Shewana3_2267 - alkaline phosphatase (RefSeq), at 2,729,003 to 2,730,877
_2267
Shewana3_2268: Shewana3_2268 - Bcr/CflA subfamily drug resistance transporter (RefSeq), at 2,731,359 to 2,732,582
_2268
Position (kb)
2729
2730
2731 Strain fitness (log2 ratio)
-1
0
1
2 at 2728.241 kb on + strand, within Shewana3_2266 at 2728.398 kb on + strand, within Shewana3_2266 at 2728.524 kb on + strand, within Shewana3_2266 at 2728.625 kb on + strand, within Shewana3_2266 at 2728.655 kb on + strand, within Shewana3_2266 at 2728.715 kb on + strand, within Shewana3_2266 at 2728.830 kb on + strand at 2729.019 kb on - strand at 2729.094 kb on - strand at 2729.438 kb on + strand, within Shewana3_2267 at 2729.540 kb on - strand, within Shewana3_2267 at 2729.605 kb on + strand, within Shewana3_2267 at 2729.822 kb on - strand, within Shewana3_2267 at 2729.936 kb on + strand, within Shewana3_2267 at 2730.026 kb on - strand, within Shewana3_2267 at 2730.026 kb on - strand, within Shewana3_2267 at 2730.206 kb on + strand, within Shewana3_2267 at 2730.214 kb on - strand, within Shewana3_2267 at 2730.592 kb on + strand, within Shewana3_2267 at 2730.593 kb on - strand, within Shewana3_2267 at 2730.597 kb on + strand, within Shewana3_2267 at 2730.605 kb on - strand, within Shewana3_2267 at 2730.612 kb on + strand, within Shewana3_2267 at 2730.733 kb on - strand at 2731.020 kb on - strand at 2731.664 kb on + strand, within Shewana3_2268 at 2731.667 kb on - strand, within Shewana3_2268 at 2731.787 kb on + strand, within Shewana3_2268
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 2,728,241 + Shewana3_2266 0.54 -0.4 2,728,398 + Shewana3_2266 0.66 +0.6 2,728,524 + Shewana3_2266 0.75 +0.1 2,728,625 + Shewana3_2266 0.82 +1.2 2,728,655 + Shewana3_2266 0.84 +1.5 2,728,715 + Shewana3_2266 0.89 +1.3 2,728,830 + +0.0 2,729,019 - -0.5 2,729,094 - +1.2 2,729,438 + Shewana3_2267 0.23 +2.4 2,729,540 - Shewana3_2267 0.29 -1.7 2,729,605 + Shewana3_2267 0.32 +0.4 2,729,822 - Shewana3_2267 0.44 +0.8 2,729,936 + Shewana3_2267 0.50 -0.4 2,730,026 - Shewana3_2267 0.55 -0.6 2,730,026 - Shewana3_2267 0.55 -0.9 2,730,206 + Shewana3_2267 0.64 -1.0 2,730,214 - Shewana3_2267 0.65 -0.7 2,730,592 + Shewana3_2267 0.85 -1.4 2,730,593 - Shewana3_2267 0.85 -0.6 2,730,597 + Shewana3_2267 0.85 +0.1 2,730,605 - Shewana3_2267 0.85 -0.9 2,730,612 + Shewana3_2267 0.86 -0.7 2,730,733 - +0.3 2,731,020 - +1.4 2,731,664 + Shewana3_2268 0.25 +1.3 2,731,667 - Shewana3_2268 0.25 -0.4 2,731,787 + Shewana3_2268 0.35 +0.8
Or see this region's nucleotide sequence