Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2249 and Shewana3_2250 are separated by 533 nucleotides Shewana3_2250 and Shewana3_2251 are separated by 119 nucleotides Shewana3_2251 and Shewana3_2252 are separated by 104 nucleotides
Shewana3_2249: Shewana3_2249 - methyltransferase type 12 (RefSeq), at 2,710,401 to 2,711,054
_2249
Shewana3_2250: Shewana3_2250 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 2,711,588 to 2,712,895
_2250
Shewana3_2251: Shewana3_2251 - DNA polymerase III, epsilon subunit (RefSeq), at 2,713,015 to 2,713,704
_2251
Shewana3_2252: Shewana3_2252 - LacI family transcription regulator (RefSeq), at 2,713,809 to 2,714,849
_2252
Position (kb)
2711
2712
2713 Strain fitness (log2 ratio)
-1
0
1
2 at 2710.777 kb on - strand, within Shewana3_2249 at 2710.837 kb on + strand, within Shewana3_2249 at 2710.863 kb on + strand, within Shewana3_2249 at 2711.063 kb on + strand at 2711.063 kb on + strand at 2711.063 kb on + strand at 2711.063 kb on + strand at 2711.200 kb on + strand at 2711.609 kb on - strand at 2711.652 kb on - strand at 2711.689 kb on + strand at 2711.689 kb on + strand at 2712.294 kb on - strand, within Shewana3_2250 at 2712.682 kb on - strand, within Shewana3_2250 at 2712.762 kb on + strand, within Shewana3_2250 at 2713.259 kb on + strand, within Shewana3_2251 at 2713.301 kb on + strand, within Shewana3_2251 at 2713.568 kb on + strand, within Shewana3_2251 at 2713.709 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 2,710,777 - Shewana3_2249 0.57 -1.1 2,710,837 + Shewana3_2249 0.67 +1.5 2,710,863 + Shewana3_2249 0.71 +1.5 2,711,063 + +1.5 2,711,063 + +0.9 2,711,063 + +0.5 2,711,063 + +2.5 2,711,200 + -1.0 2,711,609 - +1.3 2,711,652 - +2.5 2,711,689 + -0.5 2,711,689 + -0.1 2,712,294 - Shewana3_2250 0.54 -0.1 2,712,682 - Shewana3_2250 0.84 -0.5 2,712,762 + Shewana3_2250 0.90 +0.9 2,713,259 + Shewana3_2251 0.35 -0.5 2,713,301 + Shewana3_2251 0.41 -0.4 2,713,568 + Shewana3_2251 0.80 +0.1 2,713,709 + -0.1
Or see this region's nucleotide sequence