Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2014
Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Rifampicin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,400,261 | - | Shewana3_2013 | 0.44 | +2.4 | |
2,400,267 | - | Shewana3_2013 | 0.44 | -0.4 | |
2,400,269 | + | Shewana3_2013 | 0.45 | -1.3 | |
2,400,279 | + | Shewana3_2013 | 0.45 | +1.4 | |
2,400,480 | + | Shewana3_2013 | 0.62 | +0.8 | |
2,400,579 | + | Shewana3_2013 | 0.70 | +1.4 | |
2,400,588 | - | Shewana3_2013 | 0.70 | +1.4 | |
2,400,810 | + | Shewana3_2013 | 0.88 | -0.9 | |
2,400,818 | - | Shewana3_2013 | 0.89 | -2.3 | |
2,400,857 | - | +0.7 | |||
2,400,904 | + | +0.8 | |||
2,401,176 | + | +0.4 | |||
2,401,613 | + | Shewana3_2014 | 0.39 | +0.1 | |
2,401,767 | - | Shewana3_2014 | 0.56 | -0.6 | |
2,401,798 | - | Shewana3_2014 | 0.59 | -0.6 | |
2,402,199 | + | +1.3 | |||
2,402,308 | + | +0.2 | |||
2,402,412 | + | +0.3 | |||
2,402,425 | - | +0.1 | |||
2,402,623 | - | Shewana3_2015 | 0.14 | -1.4 | |
2,402,697 | + | Shewana3_2015 | 0.16 | -1.2 |
Or see this region's nucleotide sequence